Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4587 ATGCCTCCAAGAACGGTGAAGAGAGGTGCCGCTGCTGGCGGCGGCAAGAGGGGCGGAAGAGGAACCAGGGGAACCCCTAAGGCTGCTCAGAACCAGCAGACCCCTGAACCTGCGGAGGATAAACCAGTTGTCGTGGAGGAGAACAAGGCGGAAGAGAACCCTGTTGTGGAGGAGAAACCGGTTGTCGAAGAGAAGGTTGTTGCTGAAGAAAGTGCTATTGATATGAACCAAATTGCTCCAGAGGCTGGAGAAGAAGCAACCCATGTGCCTAATGGGTCGCCTGTTGCCAAAAACGATGAAGAGGAGGTTAAAGAGTCCTTAGATGTTTACGAAAAAGATGAACGTCTTGATTTGGAGGATAATGAACCTGAGTCTGACACGGAGGAGTATGGTGCAGTTGATTATGATGAGAGGGAAATTGAACAAGATGAGGCCCATGTGATGGGAGATGAAGTAGAGGAAGAAGCTGAAGATAATGTAGGTGAAGAAGAGGTTGATACAGGTGAGGAAGAAGTTGAAGGTGCTCATGAACATGAAGAAATTGAGGGTGAAGAGGATGATGAGCATCGTGGCGAGGAGCATGAGCATGAGCATGCAGAGTTGGCTGATGTGGAAGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGAAGAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGTCTTGATAAGGATGCAACTGAAAGTGATCTGAAGAAGGTTTTCAGCGAAGTTGGGGTTGTTACTGAGGTCAGGCTGATGATGAATCCTCAGACTAAAAGGAACAAGGGATTTGCATTTTTGCGTTTTGAAACTGTTGAACAAGCAAAGCGAGCTGTAGCAGAGCTGAGAAACCCAGTGATAAATGGCAAACAATGCGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTGGGAAATGTATGCAAGACATGGACAAAAGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATGTGACTGTGGTAGAAGATAGTAATGATGAAGGAAAGAATCGTGGATTTGCTTTCTTAGAATTTTCCTCCCGTTCAGAGGCTATGGATGCCTTTAAGCGACTGCAAAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCAGTGAAGGTTTCCTTCGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATTGATGCACTGCTTCCTTCATGGGATGAGGATTTTGTCCGTGATCTTCTTAAGAAATATGGGGAGATTGAAAAGATTGAGCTCGCCAGGAACATGCCAGCTGCTCGCAGGAAAGATTATGGATTTATTACCTTTGGCACACATGATGCTGCTGTAAGATGCGCTGAAAGCATTACTGGTACAGAACTGGGTGAAGGTGACAAGAAGGCAAAAGTAAGGGCTAGGCTTTCGAGACCCCTTCAAAGAGGCCGTGGAAACATTCGTGGGGAATATCGATCTAGTCGCGGATCTGGAATGATGGCAAGGCCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCATCCCGTGGGGTCAGAGGAATTGTAAGTCGTGTTCCGCCAGTCAGGCCTGTTAGTGCGAGGGATAGACGCCCTGTCATGTCCGTGCCAGTAAGAAGTAGGCCGCTGGCACCTCCAGCTAGAGCTTATGATAGGAGACTGGCTCCTGCTTATCCAAAAAGTAGCTTAAAGAGAGATTATGGTCGGCATGAGGATCTTCCACCTCCAAGAAGTAGAGCTGCTGCTGATTATGGCTCAAGGTTGTCCTCTGAAAGACGCCAATCCTACAGGGATTATCCACCCCGTGATCCTAGCTACTCAGAGCTCCCTAGAAGTGCTTCTCGTGCTGCTCCTAGGAGAGGTTATGTGGATGATGGCTATAGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCCCATCTTAGCTATCGTGAAGTACGCCCCCGTGATTATGATGCTATGTCTGGGTCAAAACGTTCTTATGCTGCTATGGATGATGTTCCCCCACGGTACGCGAATACGGGTGTTCGCCAGTCAAGAGCTCGATTGGAATATGACTATGGTGGTAGTGCTTCGCAGTATGGAGATGCTTATGTTGATAGACTTGGAAGGTCCAGCGGGGGATATGGTGGTGGCAGCAGAAGTTCTATTTCTGGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGTGGAGGCTCTTTTGGTGGTGGTGATGTTGGTGGTATGTACTCATCAAGTTATGGTGGTGATTACAACTCTCGTGGAAGTGATGTTGGTGGCAGCTCGTATTCATCAATGTATTCTGGCAGGGGCGTGGGTGGTGGTGGTAGCAGTTACATGGGTGGTGGTGGAGGATCGGGATCTTATTATTGA 2415 0.4741 MPPRTVKRGAAAGGGKRGGRGTRGTPKAAQNQQTPEPAEDKPVVVEENKAEENPVVEEKPVVEEKVVAEESAIDMNQIAPEAGEEATHVPNGSPVAKNDEEEVKESLDVYEKDERLDLEDNEPESDTEEYGAVDYDEREIEQDEAHVMGDEVEEEAEDNVGEEEVDTGEEEVEGAHEHEEIEGEEDDEHRGEEHEHEHAELADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLKKVFSEVGVVTEVRLMMNPQTKRNKGFAFLRFETVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNVCKTWTKEALKEKLKHYGVTNVEDVTVVEDSNDEGKNRGFAFLEFSSRSEAMDAFKRLQKRDVVFGVDKPVKVSFADSFIDPGDEIMSQVKTVFIDALLPSWDEDFVRDLLKKYGEIEKIELARNMPAARRKDYGFITFGTHDAAVRCAESITGTELGEGDKKAKVRARLSRPLQRGRGNIRGEYRSSRGSGMMARPSWSRPAPRSFPSRGVRGIVSRVPPVRPVSARDRRPVMSVPVRSRPLAPPARAYDRRLAPAYPKSSLKRDYGRHEDLPPPRSRAAADYGSRLSSERRQSYRDYPPRDPSYSELPRSASRAAPRRGYVDDGYSQRFERPPPPPPPHLSYREVRPRDYDAMSGSKRSYAAMDDVPPRYANTGVRQSRARLEYDYGGSASQYGDAYVDRLGRSSGGYGGGSRSSISGQDSHGMYSSRQGMSYGGGSFGGGDVGGMYSSSYGGDYNSRGSDVGGSSYSSMYSGRGVGGGGSSYMGGGGGSGSYY* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4587 804 MobiDBLite consensus disorder prediction 718 738 - -
Lja3g4587 804 SUPERFAMILY RNA-binding domain, RBD 298 387 IPR035979 GO:0003676
Lja3g4587 804 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 386 IPR000504 GO:0003723
Lja3g4587 804 Gene3D - 145 302 IPR012677 -
Lja3g4587 804 MobiDBLite consensus disorder prediction 486 655 - -
Lja3g4587 804 MobiDBLite consensus disorder prediction 95 116 - -
Lja3g4587 804 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 370 IPR000504 GO:0003723
Lja3g4587 804 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 292 IPR000504 GO:0003723
Lja3g4587 804 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 401 466 IPR000504 GO:0003723
Lja3g4587 804 MobiDBLite consensus disorder prediction 571 585 - -
Lja3g4587 804 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 399 481 IPR000504 GO:0003723
Lja3g4587 804 SMART rrm1_1 303 382 IPR000504 GO:0003723
Lja3g4587 804 SMART rrm1_1 400 475 IPR000504 GO:0003723
Lja3g4587 804 SMART rrm1_1 223 296 IPR000504 GO:0003723
Lja3g4587 804 CDD RRM_SF 401 475 - -
Lja3g4587 804 MobiDBLite consensus disorder prediction 1 61 - -
Lja3g4587 804 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 804 - -
Lja3g4587 804 MobiDBLite consensus disorder prediction 189 210 - -
Lja3g4587 804 Gene3D - 303 385 IPR012677 -
Lja3g4587 804 MobiDBLite consensus disorder prediction 40 61 - -
Lja3g4587 804 SUPERFAMILY RNA-binding domain, RBD 223 466 IPR035979 GO:0003676
Lja3g4587 804 MobiDBLite consensus disorder prediction 146 188 - -
Lja3g4587 804 MobiDBLite consensus disorder prediction 79 210 - -
Lja3g4587 804 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 300 IPR000504 GO:0003723
Lja3g4587 804 MobiDBLite consensus disorder prediction 715 738 - -
Lja3g4587 804 PANTHER RNA RECOGNITION MOTIF 1 804 - -
Lja3g4587 804 Gene3D - 389 505 IPR012677 -
Lja3g4587 804 CDD RRM_SF 304 382 - -
Lja3g4587 804 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4587 Lja-Chr3 87712435 87719078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4587 224 462 Eukaryotic Initiation Factors Gene Family AT4G34110 26.800 2.31e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4587 - - gmx:100779340 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4587 3 87712435 87719078 Lja3g4587 3 87712435 87719078 ECH
Lja3g4587 3 87712435 87719078 Lja1g2945 1 35774564 35780732 PCT