Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4572 ATGCATCTCACTCAACTCTGCATCATTCTACCTTCAGATGCTGATGATGAAATAAAGCAACTTGATAAGGGGGTGAAACTAGTTAAGGCCAAAAAACAGCCTAAAGGGTCTTGTGGGTGTCAATTTGTTGCATTTTTTCATGGTTCTTTGACAAAGTTGTATGGGAGAGCAAGGAGAACCAAGAAGAGAAACTCTGGTGTGTTGTTTCATGATATTGGTGGTGTTCAACTCAGTGCCAAGATTGGGAGGGACAATCCAAGGATATACAGCTATGCTGAGCTTTATATAGGATCAAGGGGTTTCTCTGAGGATGAAGTTCTTGGCAGTGGAGGGTTTGGTAAAGTGTACAAGGCTGTTTTGCCAAGTGATGGAACAGTGGTTGCTGTGAAATGCTGCTTAGCAGGGAAAGGGAAGCAATTGGACAAGACTTTTGCGGCGGAATTAGCGGCGGTAGCGCACCTCCGCCACAAGAATCTGGTTCCATTGAGGGGTTGGTGTGTTTTCCAAGACCAGCTTTACCTGGTTTATGAATACATGCCTAACCGCAGCCTTGACCGCGTCCTGTTTCGCCGGCCCGAGAATTTGAAAGAAGAGCCTCTTGGCTGGTTCAGGCGTGTGAAAATTGTGAAAGGTTTAGCAGCTGCATTGTACTATCTGCATGAGCAATTGGAAGCTCAAATCATTCATAGAGATGTGAAAACTAGCAATGTTATGCTTGATTCTCATTACAATGCTCGGTTGGGTGATTTTGGCTTAGCAAGGTGGCTGGAGCATGAGCTTGAGTATGAAACAAGGAAAGCACCAACCAAATTTGACCTTTTCAGGTTGGCTGAGACAACAAGGATTGGTGGCACAATTGGTTATTTACCCCCTGAAAGCTTCCAGAAAAGAAGCATGGCTACCTCGAAATCCGATGTTTTCGGGTTTGGGATAGTTGTGCTAGAATTGGTGTCTGGAAGGAGAGCTATAGATCTTACCTACCCAGATGATCAAATCATTTTGCTTGATTGGGTTAGAAGGCTTTCTGATGAAGGGAAGCTTGTTGATGCAGGGGGTACAAGGCTACTAGATGGTTCCTACAAAAAAATTGAGATTAAGCACTATATTCACATAGGTCTCTTATGCACACTCCATGACCCACAATTTAGACCAAGCATGAAGTGGATTGTGGATGCACTTTCTGAAATGTCAAGCAAATTGCCAGCACTTCCTTCATTTTATTCCCATCCTATGTATATTTCTCTGTCTTCCTCATCAGACACTAGTCCAAGCAACACAAAAGGCACAGGCACAGGCACAGAAAGTTCTACCCATCATCATGCTTCTTCCAAATATGTCACAGCCTTAGGAGAGACTATATATGAAACTGCTGAAGCTGAACAAAGAAACAGTGGAACAAGCTCTTCTCAGAGTAGGAGCATACATCATCATCATCCATCATTTCCTGTGGTTGAAACTCCTAGGGAGATATCATACAAGGAGATTGTTTCAGCCACTGATAATTTCTCAGAGTCAAGAAGGGTTGCAGAGCTAGACTTTGGAACTGCCTATCATGGCATCCTTGATGACCGCCACCATGTCATGGTGAAACGCCTTGGCATGAAGACATGCCCCGCACTGCGAAATAGATTCTCGAATGAGCTGAGGAATTTGGCGAGGCTTCGCCACAGGAATTTGGTGCACCTTAGAGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTGTTTATGATTACTCGGCAAGACTAATCCTGAGTAACCAACTTCACCATCATAAAAATGGGAGTAGAAATGGGGGTTCTGTCCTCAAGTGGCATCACAGGTACAGCATAGTGAAGTCACTTGCATCAGCACTTCTCTATCTGCATGAGGAATGGGATGAACAAGTCATTCACAGGAACATCACTTCTTCAGCAGTTACTCTTGACCCTGATATGAACCCAAGGCTAGGTAGTTTTGCTCTAGCTGAATTTTTGGCAAGAAATGAGCATGGTGATCATGTAATCATTGATAGGAGCAAATCAGTTTGTGGTATTTTTGGCTACATGTCACCGGAATATGTGGAATCGGGCGAGGCAACAGCTGCTGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTATCAGTGGACACATGGCAGTGGATTTTAGGCAACCAGAGGTACTATTGGTAAAGAAGGTTCATGAATTTGAGATAAGAAATAGACCATTAGAGCAATTAGCAGATATAGGCCTAAATGGAGAGTACAATTACAAAGAACTGATGAGGTTGGCAAGATTAGGAATTGCTTGCACTCGTTCTGACCCAAAACTAAGACCAAGCACCAGAGAAATAGTGAAAATCCTTGATGGCAATGACAAATTAATCATGGGGGATAACATGGAGAGCAGGGAAGAATGGAGACAGAGAAATGCTAGTTCTATGTCACTAGTTAAGAGAATCCAAGCTCTCGGAATACAGTAA 2466 0.4355 MHLTQLCIILPSDADDEIKQLDKGVKLVKAKKQPKGSCGCQFVAFFHGSLTKLYGRARRTKKRNSGVLFHDIGGVQLSAKIGRDNPRIYSYAELYIGSRGFSEDEVLGSGGFGKVYKAVLPSDGTVVAVKCCLAGKGKQLDKTFAAELAAVAHLRHKNLVPLRGWCVFQDQLYLVYEYMPNRSLDRVLFRRPENLKEEPLGWFRRVKIVKGLAAALYYLHEQLEAQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYETRKAPTKFDLFRLAETTRIGGTIGYLPPESFQKRSMATSKSDVFGFGIVVLELVSGRRAIDLTYPDDQIILLDWVRRLSDEGKLVDAGGTRLLDGSYKKIEIKHYIHIGLLCTLHDPQFRPSMKWIVDALSEMSSKLPALPSFYSHPMYISLSSSSDTSPSNTKGTGTGTESSTHHHASSKYVTALGETIYETAEAEQRNSGTSSSQSRSIHHHHPSFPVVETPREISYKEIVSATDNFSESRRVAELDFGTAYHGILDDRHHVMVKRLGMKTCPALRNRFSNELRNLARLRHRNLVHLRGWCTEQGEMLVVYDYSARLILSNQLHHHKNGSRNGGSVLKWHHRYSIVKSLASALLYLHEEWDEQVIHRNITSSAVTLDPDMNPRLGSFALAEFLARNEHGDHVIIDRSKSVCGIFGYMSPEYVESGEATAAADVYSFGVVVLEVISGHMAVDFRQPEVLLVKKVHEFEIRNRPLEQLADIGLNGEYNYKELMRLARLGIACTRSDPKLRPSTREIVKILDGNDKLIMGDNMESREEWRQRNASSMSLVKRIQALGIQ* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4572 821 PANTHER - 1 820 - -
Lja3g4572 821 ProSitePatterns Protein kinases ATP-binding region signature. 107 136 IPR017441 GO:0005524
Lja3g4572 821 Gene3D Phosphorylase Kinase; domain 1 75 178 - -
Lja3g4572 821 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 820 - -
Lja3g4572 821 Gene3D Transferase(Phosphotransferase) domain 1 179 401 - -
Lja3g4572 821 SMART serkin_6 101 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4572 821 Gene3D Transferase(Phosphotransferase) domain 1 584 806 - -
Lja3g4572 821 ProSiteProfiles Protein kinase domain profile. 502 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4572 821 MobiDBLite consensus disorder prediction 417 442 - -
Lja3g4572 821 SUPERFAMILY Protein kinase-like (PK-like) 479 784 IPR011009 -
Lja3g4572 821 MobiDBLite consensus disorder prediction 458 483 - -
Lja3g4572 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lja3g4572 821 ProSiteProfiles Protein kinase domain profile. 101 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4572 821 Pfam Protein kinase domain 102 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4572 821 Gene3D Phosphorylase Kinase; domain 1 462 578 - -
Lja3g4572 821 SUPERFAMILY Protein kinase-like (PK-like) 85 420 IPR011009 -
Lja3g4572 821 Pfam Protein tyrosine and serine/threonine kinase 507 782 IPR001245 GO:0004672|GO:0006468
Lja3g4572 821 MobiDBLite consensus disorder prediction 458 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4572 Lja-Chr3 87594276 87596948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4572 492 789 Receptor kinase-like Gene Family AT3G53810 36.964 2.83e-52 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja3g4572 PK_Tyr_Ser-Thr 1.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4572 - - lja:Lj0g3v0078479.1 1289.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4572 3 87594276 87596948 Lja1g2002 1 23292308 23295008 PCT