Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4571 ATGAAGTGCTTTTACTACTTCAAAGATAAATCCAGGTTCAGGAGACAAAGATCAGCACCTGAACTGAAAGAGAAGGAGAAGCTCCAGTTTTCAGGGGCTGATGATAGAGACACCAAGTCTTCATGTTCAACTGCCTCGGCTCGTGGTATACCGGAACTATACGAGGAGAAGGCTCACAATTTACGGGCGTTCTCCTACAAGGAGCTCAGGCGTGCAACGAATGATTTCAGCAGGCTTCTTAAGATTGGAGAAGGTGGGTTTGGAAGTGTGTATCAAGGCTCAATCAAGCCTGTTGAGGGGAATGGTGATCCTGTTCTTGTTGCCATCAAAAGGCTCAATAAGGAGGCATTACAGGGTCATAAGGAATGGGTGACTGAAATTCAGTTTCTTGGTGTTGTGGAGCACCCAAATCTTGTGAAGCTTATCGGATACTGTGCTCTGGATGATGAAAGAGGTATCCAGAGACTCCTTGTGTATGAATACATGCCAAATAAAAGCTTAGATTCTCATCTTTTCAATAAAGCATATGATCCTCTTCCTTGGAACACAAGACTTGAAGTAGCACTTGGAGCGGCTCAAGGATTATCGTATCTGCATGAAGGATTAGAAGTTCAGGTGATATTTCGAGATTTTAAATGTTCAAATGTACTACTGGATGAAAATTTTATACCAAAACTTTCTGATTTTGGACTTGCTAGGGAGGGACCAGTAGCTGGGAATACTCATGTTTCAACTGCCGTGATGGGGACACATGGTTATGCTGCTCCGGATTACATTGAGACAGGCCATCTCACTGCAAAGAGTGATGTGTGGAGTTTTGGTGTAGTTCTTTATGAGATGCTTACTGGCAGGCGTTCAATGGAAAGAAACAGACCCAAAATGGAGCAGAAACTTTTGGAGTGGGTGAAGCAGTATCCTCCTGATAGCAAAAGATTTGATTTGATAATGGATCCAAGACTTGAAGGACAATATTCCATTAATGTAGCAAAGAAAATTGCCAAGCTAGCAGATCATTGCCTGTGCAAGAGTTCGAAAGATCGGCCAACAATGAGTCAGGTGGTAGAGAGATTGAAGCAGATAATCAATGATTCTGATGAAGAACACTCTGCAGAGCTAAGTGCTGAGATGTCTGAAAATGATCCACTTGAGCCGGTGGAAAACCCAAATCAATCAACCTCTTCAGAAATGTGGAGAAAGAGGATGGAACATCTTGCAAAACTCGGTGAGCGAGTGGAGAGTGCTAGTAGAAGAAGATTTATGATCCTCCAGAGAGCCAATGTGTCTTCATAG 1290 0.4295 MKCFYYFKDKSRFRRQRSAPELKEKEKLQFSGADDRDTKSSCSTASARGIPELYEEKAHNLRAFSYKELRRATNDFSRLLKIGEGGFGSVYQGSIKPVEGNGDPVLVAIKRLNKEALQGHKEWVTEIQFLGVVEHPNLVKLIGYCALDDERGIQRLLVYEYMPNKSLDSHLFNKAYDPLPWNTRLEVALGAAQGLSYLHEGLEVQVIFRDFKCSNVLLDENFIPKLSDFGLAREGPVAGNTHVSTAVMGTHGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSMERNRPKMEQKLLEWVKQYPPDSKRFDLIMDPRLEGQYSINVAKKIAKLADHCLCKSSKDRPTMSQVVERLKQIINDSDEEHSAELSAEMSENDPLEPVENPNQSTSSEMWRKRMEHLAKLGERVESASRRRFMILQRANVSS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4571 429 MobiDBLite consensus disorder prediction 365 399 - -
Lja3g4571 429 Gene3D Transferase(Phosphotransferase) domain 1 162 381 - -
Lja3g4571 429 SUPERFAMILY Protein kinase-like (PK-like) 59 371 IPR011009 -
Lja3g4571 429 PANTHER OS01G0588500 PROTEIN-RELATED 36 417 - -
Lja3g4571 429 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Lja3g4571 429 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4571 429 ProSitePatterns Protein kinases ATP-binding region signature. 82 110 IPR017441 GO:0005524
Lja3g4571 429 CDD STKc_IRAK 82 360 - -
Lja3g4571 429 PANTHER OS07G0495150 PROTEIN 36 417 - -
Lja3g4571 429 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Lja3g4571 429 MobiDBLite consensus disorder prediction 14 44 - -
Lja3g4571 429 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4571 Lja-Chr3 87581893 87587547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4571 1 357 Glycoside Hydrolase AT3G07070 43.836 5.22e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja3g4571 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4571 - - gmx:100784625 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4571 3 87581893 87587547 Lja3g4571 3 87581893 87587547 ECH