Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4566 ATGGCAGCAACCACCAATGGAGACCACCAAACTACCCTTTTTTGCACAGCTAAAGGCGGTAGTGATCCATTAAGCTGGGGTGTGGCAGCGGAGTCAATGAAGGGGAGCCACCTTGATGAGGTTAAACGCATGGTGGCTGAGTACCGGAAGCCCGTGGTCCGGCTGGGCGGAGAGACACTGACTATAGCTCAGGTGGCTGCTGTTGCCGCCTATGACCAGCACAATGGCGTGAGCGTTGAGCTGTGCGAGTCAGCCAGAGCTGGTGTTAAGGCAAGCAGTGACTGGGTGATGAATAGCATGAACAATGGCACTGACAGCTACGGTGTCACCACCGGCTTTGGTGCCACCTCCCATCGTAGAACTAAACAAGGCAATGCTTTGCAGCAAGAGCTCATCAGGTTTTTGAATGCCGGAATATTTGGCAATGGTACTGAATCAAGCCACACACTACCACAGCCTGCAACTAGAGCAGCAATGCTAGTGAGGATCAACACTCTTCTCCAAGGGTACTCAGGCATTAGATTTGAGATCCTTGAAGCCATCACCAAGCTCCTAAACAACAATATCACACCATGTTTACCACTTCGTGGTACCGTCACAGCTTCTGGTGATTTGGTCCCACTATCATACATTGCTGGACTGCTTACTGGCAGACCAAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCGAATTGGCTAGCATCGATTCAGGATTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGCACTGCCGTTGGTTCTGGCTTGGCTTCTATTGTTCTCTTTGAGGCTAACATATTGGCTGTGCTGTCAGAAGTCTTATCAGCAATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACCGACCATTTGACGCATAGGCTTAAGCACCACCCTGGACAAATTGAGGCTGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCCTACATCAAAGCAGCAAAGAAGTTGCACGAGATGGATCCCTTGCAAAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGTCCTCTGATTGAGGTGATTCGATTCTCAACCAAGTCGATTGAGAGAGAGATTAACTCCGTGAATGATAACCCTCTGATCGACGTTTCCAGAAACAAGGCCTTACATGGCGGTAATTTTCAAGGAACCCCAATTGGAGTTTCCATGGACAACACACGACTAGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAGTTCACTGAGCTTGTCGATGATCATTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGTAGAAATCCTAGCTTGGATTATGGTCTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAACTCCAATATCTTGCGAATCCAGTCACAACCCATGTTCAAAGTGCTGAACAGCACAACCAAGATGTGAACTCCTTGGGTTTGATTTCTTCTAGAAAAACAAACGAAGCCATTGAGATCCTTAAGCTCATGTCATCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAGATACTCAGTGAAGAACACCGTAAGCCAGGTTGCCAAGAGGACACTTACCACAAGTGTCAGCGGAGAACTCCATCCTTCAAGATTTTGTGAAAAAGATTTGCTGAAAGTGGTTGATAGGGAGGTTGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAATTAAGGCAAGTACTTGTGGATCATGCACTAGTAAATGCAGAGAACGAGAAGAACCAGAACACGTCAATCTTTCAAAAGATTTCAACTTTTGAAGATGAGTTAAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGAAATGCATATGAGAGTGGCAATCCAGTAATTCCAAACAAGATCAATGAATGCAGATCTTATCCACTATACAAGTTTGTGAGAGAGGAGTTGGGAACTGAGTTGCTAACTGGAGAAAAGGTCAGGTCACCAGGTGAGGAGTGTGACAAACTGTTCACAGCTATATGTCAGGGTAAAATTATTGATCCTCTCCTGGAATGCCTTGGGGAGTGGAACGGTGCACCTCTTCCAATATGTTAA 2148 0.4595 MAATTNGDHQTTLFCTAKGGSDPLSWGVAAESMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAAYDQHNGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGNALQQELIRFLNAGIFGNGTESSHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLRYSVKNTVSQVAKRTLTTSVSGELHPSRFCEKDLLKVVDREVVFAYIDDPCSATYPLMQKLRQVLVDHALVNAENEKNQNTSIFQKISTFEDELKSLLPKEVESARNAYESGNPVIPNKINECRSYPLYKFVREELGTELLTGEKVRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4566 715 Gene3D - 528 649 IPR023144 -
Lja3g4566 715 SUPERFAMILY L-aspartase-like 22 715 IPR008948 GO:0003824
Lja3g4566 715 Pfam Aromatic amino acid lyase 60 529 IPR001106 -
Lja3g4566 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja3g4566 715 PANTHER HISTIDINE AMMONIA-LYASE 17 715 IPR001106 -
Lja3g4566 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Lja3g4566 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 715 - -
Lja3g4566 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Lja3g4566 715 CDD PAL-HAL 58 525 IPR001106 -
Lja3g4566 715 Gene3D - 14 261 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4566 Lja-Chr3 87519076 87521223 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4566 22 715 Monolignol Biosynthesis Gene Families AT2G37040 83.718 0.0 1232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4566 K10775 - gmx:100788438 1268.45