Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4564 ATGGCAGCAACCACCAACAGCCAAAACAGTTCCCTTTTTTGCACTGCTAAAGGCGGTAGTGATCCATTAAATTGGGGTGTGGCGGCGGAGTCAATGAAGGGGAGCCACCTTGATGAGGTCAAACGCATGGTGGCGGAGTACAGGAAGCCGGTGGTCCGGTTGGGCGGAGAGACGCTGACTATAGCTCAGGTGGCTGCCGTTGCAGCACATGACCAGCACAATGGTGTGAGCGTTGAACTGTGCGAGTCAGCCAGAGCTGGTGTCAAGGCCAGCAGTGACTGGGTGATGAATAGCATGAACAATGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACTTCCCATCGCAGAACCAAACAAGGCAATGCTTTGCAGCAAGAGCTCATCAGGTTTTTGAATGCCGGAATATTTGGCAATGGTACCGAATCAAGCCACACATTGCCACAGCCTGCAACTAGAGCAGCAATGCTAGTGAGGATCAACACTCTTCTCCAAGGGTACTCAGGCATTAGATTTGAAATCCTAGAAGCCATTACCAAGCTCCTCAACAACAACATCACCCCATGTTTACCACTTCGTGGTACTGTCACAGCTTCTGGTGATCTGGTCCCACTTTCATACATTGCTGGACTGCTTACTGGCCGACAAAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCGAATTGGCTAGCATCGATTCAGGATTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGCACTGCCGTTGGTTCTGGCTTGGCTTCTATTGTTCTCTTTGAGGCTAACATATTGGCTGTGCTGTCAGAAGTCTTATCAGCAATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACCGACCATTTGACGCATAGGCTTAAGCACCACCCTGGACAAATTGAGGCTGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCCTACATCAAAGCAGCAAAGAAGTTGCACGAGATGGATCCCTTGCAAAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGTCCTCTGATTGAGGTGATTCGATTCTCAACCAAGTCGATTGAGAGAGAGATTAACTCCGTGAATGATAACCCTCTGATCGACGTTTCCAGAAACAAGGCCTTACATGGCGGTAATTTTCAAGGAACCCCAATTGGAGTTTCCATGGACAACACACGACTAGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAGTTCACTGAGCTTGTCGATGATCATTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGTAGAAATCCTAGCTTGGATTATGGTCTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAACTCCAATATCTTGCGAATCCAGTCACAACCCATGTTCAAAGTGCTGAACAGCACAACCAAGATGTGAACTCCTTGGGTTTGATTTCTTCTAGAAAAACAAACGAAGCCATTGAGATCCTTAAGCTCATGTCATCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAGATACTCAGTGAAGAACACCGTAAGCCAGGTTGCCAAGAGGACACTTACCACAAGTGTCAGCGGAGAACTCCATCCTTCAAGATTTTGTGAAAAAGATTTGCTGAAAGTGGTTGATAGGGAGGTTGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAATTAAGGCAAGTACTTGTGGATCATGCACTAGTAAATGCAGAGAACGAGAAGAACCAGAACACGTCAATCTTTCAAAAGATTTCAACTTTTGAAGATGAGTTAAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGAAATGCATATGAGAGTGGCAATCCAGTAATTCCAAACAAGATCAATGAATGCAGATCTTACCCACTATACAAGTTTGTGCGAGAGGAGTTGGGAACTGAGTTGCTAACTGGAGAAAAGGTCAGGTCACCAGGTGAGGAGTTTGACAAACTGTTCACAGCTATATGTCAGGGTAAAATTATTGATCCTCTCCTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATATGTTAA 2145 0.4615 MAATTNSQNSSLFCTAKGGSDPLNWGVAAESMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAAHDQHNGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGNALQQELIRFLNAGIFGNGTESSHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGEVLNAKEAFELASIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLRYSVKNTVSQVAKRTLTTSVSGELHPSRFCEKDLLKVVDREVVFAYIDDPCSATYPLMQKLRQVLVDHALVNAENEKNQNTSIFQKISTFEDELKSLLPKEVESARNAYESGNPVIPNKINECRSYPLYKFVREELGTELLTGEKVRSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4564 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Lja3g4564 714 CDD PAL-HAL 57 524 IPR001106 -
Lja3g4564 714 Gene3D - 13 260 IPR024083 -
Lja3g4564 714 Gene3D - 527 648 IPR023144 -
Lja3g4564 714 Pfam Aromatic amino acid lyase 59 528 IPR001106 -
Lja3g4564 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja3g4564 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 714 - -
Lja3g4564 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Lja3g4564 714 PANTHER HISTIDINE AMMONIA-LYASE 16 714 IPR001106 -
Lja3g4564 714 SUPERFAMILY L-aspartase-like 21 714 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4564 Lja-Chr3 87508208 87511094 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4564 21 714 Monolignol Biosynthesis Gene Families AT2G37040 83.862 0.0 1235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4564 K10775 - gmx:100811101 1263.44