Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4560 ATGGCTTCTCCTCCACCACTCTCCCTAAACGTCATCGGATCAGACACATTCACTCCATTCTCCACCACCCTCCCACCACCCTCACCTCGCCGTTCATCCTCTCCGTTACAGAATCTCAGCCCGAGCATTCTCATCATCATAACCGTCCTCGCCGTAACCGTCATCGTCTCCCTCGCACTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGTCTCTCCACCTCTCCCTCCACCACCTCAACTCCAATCTTCACCTCCAGCCGCCGCATCTCTCCCGAAATTCCACCTCCTCCTCACGGTGCTGCCTCCGTCATCGAGACTCTCCCGCTCTTCGCTTTCTCCGCCGTTTCCCGCTCATCTGCCGCTGACTGCGCTGTCTGCCTCTCGAAGTTCCACCGCGACGACCTCCTCCGTCTTCTCCCTCTCTGCTGCCACGCCTTCCACGCTGAGTGCATTGATACCTGGCTCCGATCTAACCTCTCTTGCCCGCTCTGCCGCTCCGCGATCTTCGCCTCCGATTCCGACCTCGCTAAAGTGCTCCGATCATCCGATGTCGCCTCCGGCGACAGCTTCCGCGTCGAGATAGGTAACATCAGCCGCCGTGGAACCACCGCACCGGAAACCGTCGCCTCCGGTGACACTCGCGGCGGTGACTCGAGGTCCTATTCCATCGGATCGTTCGAGTATTTAGTGGAAGAGGAATCGGAGATTCCGTTCAGCCACACGCACCGGAGAAATGTCTCTGACCAGAAGGACATTCCGGCGGCAGCAGATTCCACGGCGGCTCCGGCTCAACATGAAGCGAACCTCGCCGGAGAAGTTGCCGGAGTTCGAAGCTGGTTGAAGGAGTACGTGGATAGATTCTCCGCGTCAATTTCATCGCGAACGGAGTCGTTTCGGAGTTCTGGAAGATTCTTCGGCGTTGGCGGGAGTAGTCGCCGGAGCGACGTCGTTCCGATCGATGCGGCAGAGTATGATGTGGAAGGGAACAGAGTAGGCGAGGAACTCACCGAGATGTTCCGGTGGCTATCAGGGGTATAA 1050 0.5905 MASPPPLSLNVIGSDTFTPFSTTLPPPSPRRSSSPLQNLSPSILIIITVLAVTVIVSLALCFLLRHLNRRCLRRLSTSPSTTSTPIFTSSRRISPEIPPPPHGAASVIETLPLFAFSAVSRSSAADCAVCLSKFHRDDLLRLLPLCCHAFHAECIDTWLRSNLSCPLCRSAIFASDSDLAKVLRSSDVASGDSFRVEIGNISRRGTTAPETVASGDTRGGDSRSYSIGSFEYLVEEESEIPFSHTHRRNVSDQKDIPAAADSTAAPAQHEANLAGEVAGVRSWLKEYVDRFSASISSRTESFRSSGRFFGVGGSSRRSDVVPIDAAEYDVEGNRVGEELTEMFRWLSGV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4560 349 SUPERFAMILY RING/U-box 107 175 - -
Lja3g4560 349 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Lja3g4560 349 Pfam Ring finger domain 126 169 IPR001841 -
Lja3g4560 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 178 IPR013083 -
Lja3g4560 349 SMART ring_2 127 168 IPR001841 -
Lja3g4560 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 23 317 - -
Lja3g4560 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 23 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4560 Lja-Chr3 87464744 87465966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4560 101 175 C3H Transcription Factor Family AT3G18930 56.322 2.82e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4560 K10663 - gmx:100776516 347.821