Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4558 ATGGCTTCCACATTCGTCACCCTACCAACTCCCTTCCTTCACAAAACCAGTACCAGTGTCCCCTCAACCTCTTTCTCCAACAAGAGACTCCCATTTTTGAAGAGGAACTCTTTGAAGGTTAATGCAGTTGCCACGAAATGGGAACCCGCTAAGGTTGTGCCCCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTAGCACAAAAAACAACTGGTGGAATTTTGTTGCCCAAGTCAGCTGTTAAATTTGAGCGTTATCTTGTGGGGGAAGTCCTAACTGTTGGTGCTGAGGCTGGAGAAGTAAAGGCTGGGGCAAAGGTACTATTCACCGACGTGAATGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCTGTAAAGCAAGTGACTTATTGGCCGTGGTTGAGTAG 417 0.4724 MASTFVTLPTPFLHKTSTSVPSTSFSNKRLPFLKRNSLKVNAVATKWEPAKVVPQADRVLIRLEELAQKTTGGILLPKSAVKFERYLVGEVLTVGAEAGEVKAGAKVLFTDVNAYEVDLGTDAKHCFCKASDLLAVVE* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4558 138 Pfam Chaperonin 10 Kd subunit 51 137 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g4558 138 PANTHER 10 KDA HEAT SHOCK PROTEIN 5 137 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g4558 138 SMART Cpn10_2 51 137 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g4558 138 CDD cpn10 51 137 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g4558 138 Gene3D GroES chaperonin 47 138 IPR037124 GO:0006457
Lja3g4558 138 SUPERFAMILY GroES-like 51 138 IPR011032 -
Lja3g4558 138 PANTHER 10 KDA CHAPERONIN 1, CHLOROPLASTIC-RELATED 5 137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4558 41 138 Calmodulin-binding Proteins AT5G20720 34.615 3.52e-10 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4558 3 87449788 87453614 Lja3g4558 3 87449788 87453614 ECH