Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4541 ATGTCGTTGGAGAACTTCTTCAACATATTTGGTGCAACAAAGCTCAGAAGTCTGCTTTGGACTGCATGGCCACCACTAGACTCAACATGCTTGTTGGAGCATGTAACTCTACCTGTGGAACTTGGGTTCTTTATGATCTTGCTAGTCCAATTCCTAAGAAAATGTATGAACCTGATCAGAAAGCAAAGCAAGGTCTTAGATCATGCCACAGAGATGCGTCCAACTGCAAGAAAATTCGGTTTGGCTTTCAAACTCAGCTTTGTTTGCACAACTTTCTTGTTGGCTGTTCGCATCTTCATGCTGATACGAATGCTCGATCACGAGGCTCAGTGTACCTCTAAACTCCAGGCTTTTTCATCAGAGATAATTCAAGTGTTATCATGGGCAATTAGTCTAATAGCAATGTGCAAGATAACAAAATCAGACACTCATTTCCCTTGGATTCTAAGGGCTTGGTGGCTTTTCAGTTTCCTTTTGTGCATTACCAGCACAGTGCTTCATGCACATTCCATTTTCACCAACCAGGGTCAGATTGGTGTACGAGAATATGCAGATTTCTTTGGATTGATGGCTTCTACATGCCTTCTAGTTATTTCAACAAGAGGGAAGACAGGCATTGTCATAACAACCGCCGCAAATGGTATATCAGAACCACTTCTGGGAGAGAAAACACTGAAACAGAAACATTCTGAGTTTCAAGGTGAATCTCCATATGGAAAAGCTACTGTTCTGCAACTCATTAACTTCTCCTGGCTCAATCCTTTGTTTGCAGTAGGGTACAAGAGACCCCTTGAACTGAATGACATTCCTGAAGTTGACATCAAGGACTCTGCTGAGTTTCTAACCTGCTCCTTTGATGAGAAGATTAGACAAGTTAAGGAGAGAGATGGGACTTCTAACCCATCTATCTACAAGGCAATCTACTTATTTGCTAGGAAGAAAGCAGCAACCAATGCGTTTTTCGCAGTGGTGAGTGCTGCAGCATCATATGTTGGTCCATACTTGATCACTGACTTTGTGGATTTCCTAGGCGAAAAGGGAAACCGGGGGTTGAAGAGTGGGTATCTTCTGTCACTAGCCTTCTTGTGTGCCAAAATGATTGAGACCATAGCTCAGAGGCAATGGATTTTTGGCGCCCGGCAGTTAGGCCTTCGCCTCAGAGCTGCATTGATATCTCATTTGTATAAGAAGGGCTTGCATCTATCAAGCAGATCGCACCAAAGTCACACAGGCGGCGAGATAATGAATTATATGAGTGTAGATGTTCAGAGAATTACAGATTTTGTTTGGTATGTGAATGTAATATGGATGCTGCCTATACAAATTTCTTTAGCTGTCTTCATTTTGCATACAAATCTTGGATTAGGTTCATTGGCTGCACTAGCAGCTACACTGGCAGTGATGGCTCTGAACATACCTCTTACAAAAATACAGAAAAGATACCAAACGAAGATCATGGAGGCCAAGGACAACAGGATGAAAGCCACTTCAGAGGTTCTCAGAAACATGAAGACTTTGAAACTTCAAGCATGGGATAGTCAATTTTTTCAAAGGATAGAAGCATTGAGGCAAATAGAGTATAGCTGGTTATTGAAGTCATTAAGGCAAGCAGCATTTGCTGCTTTTATCTTCTGGGGATCACCCACATTCATTTCTGTGATAACCTTTTGGGCATGCATGTTCCTGGGGATTGAACTCACAGCTGGAAGGGTCTTATCAGCATTCGCCACATTTCGAATGTTGCAGGATCCTATATTTAGTTTACCTGATTTGCTCAATGTGATTGCTCAAGGGAAAGTTTCAGTTGATAGGATTGCTTCTTTCCTCCGGAAGGAAGAAATCCAACGTGATGTAATCGAACTTGTCGCGAAGGACAAAACAGAATTTGACATAGTTATTGATAAAGGGAGATTCAGCTGGGATCCTGAGATGACTAGTCCAACCATTGATGGAATAGAATTGAAAGTTAAGAGAGGAATGAAGGTGGCAATTTGCGGAACTGTAGGCTCAGGAAAGTCTAGTCTTCTCTCAGGGATTTTGGGAGAGATCTATAAACAATCTGGGACAGTGAAGATTAGTGGAACAAAAGCTTATGTTCCACAATCAGCGTGGATACTAACTGGAAATATCAGGGACAACATTACCTTTGGAAAAGAGTACAATGATGAAAAATATGAGAAAACTGTGGAAGCATGTGCACTGAAAAAGGACTTTGAGCTATTCTCAGGTGGTGACCTTACAGAGATTGGAGAAAGAGGGATTAACATGAGTGGAGGACAGAAGCAAAGGATACAGATAGCTAGAGCAGTTTACCAGGATGCTGACATATATCTTTTTGATGACCCTTTCAGTGCTGTTGATGCTCATACCGGCACCCACCTCTTTAAGGAGTGTCTTATGGGGATTCTCAAAGAGAAAACTATACTTTTTGTTACGCACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAACCTTTGAAGAACTTCTTAAGCAAAATATAGGTTTTGAGGTTTTAGTTGGTGCTCACAGCAAAGCTCTAGAGTCAATTCTTATGGTTGAAAATTCAAGTAGAACAAAATTAAGTCCAATAGCTGAAGGGGAATCCAACACCAACTCTAGCTCAAGTCTTAAACTCGAGCATACACAGCATGATGACTCGGTGCAAGATAATCTTCTTCCAGATAGCAAAGGCAATGTTGGGAAATTGGTGCAAGAAGAAGAAAGAGAAACAGGAAGCATATCAAAAGAAGTTTACTGGTCTTATTTGACCACAGTTAAAAGGGGAATCCTGGTTCCACTCATACTATTGGCACAGTCTTCATTCCAAATATTTCAGATTGCAAGTAATTATTGGATGGCCTGGGTTTGTCCCACAACAACTGATGCCAAACCTATTTATGAGATGAATTTCATACTACTTATTTATATGCTGCTATCTGTTGCTGGTTCATTCTGTGTTCTGGCGCGAGCCATGTTGGTGTTAAATGCTGGACTTTGGACAGCACAGACGTTTTTCACCAAAATGTTGCATAATATCCTCCGAGCCCCCATGGCGTTTTTTGATTCCACCCCAACTGGAAGAATCTTGAACAGGGCCTCTACAGATCAGAGTGTGCTAGACTTGGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAATAATACAAATTCTGGGCACTATTGCAGTGATGTCTCAGGTGGCATGGCAAGTGTTTGTCATCTTCATTCCTGTAACTGGAGTCTGCATCTGGTATCAACGATATTATACGCCAACAGCAAGAGAATTGGCTCGGTTAGCACAGATACAAATTACTCCAATTCTCCACCATTTTTCAGAATCTTTAGCAGGAGCAGCATCAATACGAGCTTTTGATCAAGAACATCGTTTCGTATACACAAATCTTGGCCTTGTGGATGGCTTTTCAAAGCCATGGTTTCACAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTTTCAAATTTTGTTTTTGCCTTCTCACTGGTCATGCTAGTGAGCCTCCCTGAAGGAATTATCAATCCAAGCATTGCAGGGTTGGCTGTAACATATGGAATCAATCTAAATGTCTTGCAAGCTTCAGTTATATGGAACATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTATACACATATAGCAAGTGAAGCACCTCTTGTGATTGAAGACTGCAAGCCACCAAGCAACTGGCCAGAAACTGGAACAATATGTTTCAAAAATTTGCAGATACGTTATGCTGAACATCTCCCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGAAGAAAGAAAATCGGTGTTGTAGGACGCACCGGAAGTGGAAAATCTACCCTCATTCAGGCTATTTTCAGGATTGTTGAACCCAGAGAAGGAAACATTATCATTGACAATGTGGACATATGCGAGATAGGCCTACATGACTTAAGGTCAAAGCTAAGCATTATCCCACAAGACCCAGCCTTGTTTGAAGGCACAGTTAGAGGAAACCTGGACCCATTGGAGCAATACTCTGACATTGAAGTGTGGGAGGCTCTTGATAAATGTCAGCTAGGACACCTAGTGAGGGCCAAGGAAGGGAAGCTGGACTCCCCAGTTGTTGAAAATGGTGATAACTGGAGTGCCGGACAAAGGCAACTATTTTGCCTTGGAAGAGCCCTGCTGAAGAAAAGTAGCATACTAGTACTGGATGAAGCAACAGCCTCCGTGGATTCTGCAACTGATGGTGTGATACAGGATATCATCAGTGAAGAGTTCAAAGATCGAACTGTGGTCACCATAGCTCATCGAATCCACACAGTAATTGATAGCGATTTGGTTTTGGTTCTCAGTGATGGGAGAGTAGCGGAGTTTGACGAACCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTTCAAACTTATAAAGGAGTATTCAAGCAGATCACATAGCTTCAACAGCTTGGCAACTCAACATGTCCAGAGCAGGGAATGA 4557 0.4178 MSLENFFNIFGATKLRSLLWTAWPPLDSTCLLEHVTLPVELGFFMILLVQFLRKCMNLIRKQSKVLDHATEMRPTARKFGLAFKLSFVCTTFLLAVRIFMLIRMLDHEAQCTSKLQAFSSEIIQVLSWAISLIAMCKITKSDTHFPWILRAWWLFSFLLCITSTVLHAHSIFTNQGQIGVREYADFFGLMASTCLLVISTRGKTGIVITTAANGISEPLLGEKTLKQKHSEFQGESPYGKATVLQLINFSWLNPLFAVGYKRPLELNDIPEVDIKDSAEFLTCSFDEKIRQVKERDGTSNPSIYKAIYLFARKKAATNAFFAVVSAAASYVGPYLITDFVDFLGEKGNRGLKSGYLLSLAFLCAKMIETIAQRQWIFGARQLGLRLRAALISHLYKKGLHLSSRSHQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMALNIPLTKIQKRYQTKIMEAKDNRMKATSEVLRNMKTLKLQAWDSQFFQRIEALRQIEYSWLLKSLRQAAFAAFIFWGSPTFISVITFWACMFLGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLRKEEIQRDVIELVAKDKTEFDIVIDKGRFSWDPEMTSPTIDGIELKVKRGMKVAICGTVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIRDNITFGKEYNDEKYEKTVEACALKKDFELFSGGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGRIAQAGTFEELLKQNIGFEVLVGAHSKALESILMVENSSRTKLSPIAEGESNTNSSSSLKLEHTQHDDSVQDNLLPDSKGNVGKLVQEEERETGSISKEVYWSYLTTVKRGILVPLILLAQSSFQIFQIASNYWMAWVCPTTTDAKPIYEMNFILLIYMLLSVAGSFCVLARAMLVLNAGLWTAQTFFTKMLHNILRAPMAFFDSTPTGRILNRASTDQSVLDLEMANKIGWCAFSIIQILGTIAVMSQVAWQVFVIFIPVTGVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEHRFVYTNLGLVDGFSKPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTHIASEAPLVIEDCKPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPREGNIIIDNVDICEIGLHDLRSKLSIIPQDPALFEGTVRGNLDPLEQYSDIEVWEALDKCQLGHLVRAKEGKLDSPVVENGDNWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQDIISEEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRVAEFDEPSKLLEREDSFFFKLIKEYSSRSHSFNSLATQHVQSRE* 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4541 1518 Gene3D ABC transporter type 1, transmembrane domain 287 614 IPR036640 GO:0005524|GO:0016021
Lja3g4541 1518 Gene3D ABC transporter type 1, transmembrane domain 909 1244 IPR036640 GO:0005524|GO:0016021
Lja3g4541 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 847 IPR027417 -
Lja3g4541 1518 Pfam ABC transporter 650 783 IPR003439 GO:0005524
Lja3g4541 1518 CDD ABC_6TM_ABCC_D1 330 605 IPR044746 GO:0140359
Lja3g4541 1518 CDD ABCC_MRP_domain1 631 831 - -
Lja3g4541 1518 PANTHER - 78 1508 - -
Lja3g4541 1518 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Lja3g4541 1518 MobiDBLite consensus disorder prediction 874 890 - -
Lja3g4541 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 631 854 IPR003439 GO:0005524
Lja3g4541 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 946 1226 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4541 1518 SMART AAA_5 658 831 IPR003593 -
Lja3g4541 1518 SMART AAA_5 1289 1474 IPR003593 -
Lja3g4541 1518 CDD ABCC_MRP_domain2 1261 1481 - -
Lja3g4541 1518 Pfam ABC transporter transmembrane region 956 1190 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4541 1518 Pfam ABC transporter transmembrane region 319 581 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4541 1518 SUPERFAMILY ABC transporter transmembrane region 931 1245 IPR036640 GO:0005524|GO:0016021
Lja3g4541 1518 MobiDBLite consensus disorder prediction 874 909 - -
Lja3g4541 1518 Gene3D - 623 857 IPR027417 -
Lja3g4541 1518 Gene3D - 1246 1499 IPR027417 -
Lja3g4541 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1265 1497 IPR003439 GO:0005524
Lja3g4541 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4541 1518 Coils Coil 478 498 - -
Lja3g4541 1518 Pfam ABC transporter 1280 1428 IPR003439 GO:0005524
Lja3g4541 1518 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 78 1508 - -
Lja3g4541 1518 CDD ABC_6TM_ABCC_D2 944 1238 IPR044726 GO:0140359
Lja3g4541 1518 SUPERFAMILY ABC transporter transmembrane region 312 613 IPR036640 GO:0005524|GO:0016021
Lja3g4541 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1491 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4541 Lja-Chr3 87190091 87199740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4541 611 888 Calmodulin-binding Proteins AT2G36910 28.814 1.64e-21 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4541 3 87190091 87199740 Lja3g4541 3 87190091 87199740 ECH