Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4508 ATGAGCAGAGCCACCGTTGGGGACGACGGCGAAGAAGAAACTGAGTGCTTCTACGAATCCCACGACCGCTTGCTCTCTCTTTCTTCCTCTTGCTCTTGCTCCAACTCCAACTCTGATAACGAAGAACAAGATAACACCACCACCGCCACCGCCACCGCCACCGCCACCAATTGTAATTACAATTTCGCCCTCAACAGTTACGACGTATGGATCTCTCAACCCTCCTCCGTCGAAGAACGCCGCTCCCGCCTCCTCCAAAACATGGGCCTCTCCTCCGACCCTTCCCTCTCCCGCCGCTCCAACCTCAATTCCATCTTCCGATCCAAATCCGACGGTGGCGCCACCGCCAACAATATCAACAACCTGTCTTCTTCTTCTTCTTCTTCTTTTCATTCTGCTACCTCATCCTCCTCTGTGAATAATGGTATCAGGGGGAACGGCGGCGGCGGTGGTGGTGGCTCCCCGGGGAAGCCGCCGTCCGGGAAGAATTGCCGGAGGAGTCGGTCGTCGTCGGATTCTGGTGATGCGGCGGAGAAAGGGTGGGAGCGGGCTTGTACGATAAGAGATCTTGACAACGGGAAGGAGTTTGTGGTGAAGGAGGTGACGGAGGATGGGGTGTTGGATGAGGTGAAGGAGGTTGGGACTGGGAGGCAGCTTACTATGGAGGAGTTTGAGATGACGGTGGGGCACTCGCCGATCGTGCAGGAGTTGATGCGGCGGCAGAATGTGGAGGAGAATAAGGACGGTGTTGATTCCGGTGGAGGGAGTTCTAATGGTGGTGGAAGTGGTAGTGGTCATGGTCATGGTAATGGTGGCGGTCATGGTAATGGGAGTAAGGTGAAGAAGAAAGGAGGGGGTTGGTTGAAGAGTATTAAGAGCGTTGCGAGCTCGATGGCGGGGCATAAGGAGAGGAGGAGCAGCGATGAGAGGGATACGTCGTCGGAGAAAGGCGGGAGGAGGTCGAGCTCCGCCACGGATGACAGCCAGGATGGTACATTTCATGGACCGGAGAGGTTGAGGGTGAGGCAGTATGGGAAATCATGTAAGGAGGTAACTGCATTGTACAAGAGCCAAGAGATTCAGGCTCACACTGGATCCATTTGGAGCATCAAGTTCAGTTTGGATGGGAAGTACCTTGCTAGTGCTGGTGAGGATTGTGTGATCCATGTTTGGCAGGTTGTGGAATCTGAGAGGAAAGGGGAGCTGCTGCTCATGGAGAAACCGGAGGATGTGAGTGTCAATATGCTGTTTCTTGTCAACGGGTCGCCGGAGCCGGCTGCGGCCCTGCTGTCTCCTGGGTTGGACATCAACCCTGAGAGGAAGAGGAAGGGGAGGTCATCAGTTAGTAGAAAGTCAATGAGCTTGGACCAGTTGGTTGTTCCGGAGAACGTGTTTGGACTCACTGAAAAACCCATTTGCTCCTTTCAGGGCCATCTCCATGATGTGCTTGATCTGTCTTGGTCCAAGTCTCAGCACTTGCTTTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGACTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGCTACTTCATTAGTGGATCTTTAGATGCTAAGGTTCGCATTTGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGCCACTTATATGATACGTCCGAAAATAAATTGCAACTGAAAAGCCAGATCAATCTGCAGAACAAGAAGAAGAAATCCCATCACAAAAAAATTACCGGTTTCCAGTTTGCCCCAGGAAGTTCGTCAGAAGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCACAAGTTTAAAGGCTTTCGAAATGCAACTAGCCAGATTTCAGCCTCCCTCACAGCTAATGGTAAATACATCGTCGCAGCGAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCTGATTGCAGGCCTAACAGGAGTAAAGGCGTCACTGTCACAAGCTCATACGAACATTTTCACTGTAAAGATGTGTCGGTGGCCATTCCCTGGCCTGGAATGGGTGATGCATGGGACATGCATGATACATTCTCAGCAGAACAGCCTGAGCTCGATAGCAATGCTGACGAAGTTGTATCAACCAATCATCCTCCTACCCCTGTAGAGGAAAACTTCGGTACCGAGGGTTCACGATCTGCTTCAGGTTACCATAATAGTCCACGCCACGCAACCATCGCAAGCGCGACGAACAGTTACTTTTTCGATAGAATTTCTGCAACATGGCCTGAAGAAAAACTTGTTCTAGCTGCGAGAAATCGAAGCCCTCGTGTCAGCGTGGATTTCTCTAACGGGGTAAGTCAAAAAATGTCAGCGTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGCGAAATCAGAACTTTTCAGAATTTTGGATTACCACTTCGAATATAA 2550 0.5 MSRATVGDDGEEETECFYESHDRLLSLSSSCSCSNSNSDNEEQDNTTTATATATATNCNYNFALNSYDVWISQPSSVEERRSRLLQNMGLSSDPSLSRRSNLNSIFRSKSDGGATANNINNLSSSSSSSFHSATSSSSVNNGIRGNGGGGGGGSPGKPPSGKNCRRSRSSSDSGDAAEKGWERACTIRDLDNGKEFVVKEVTEDGVLDEVKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEENKDGVDSGGGSSNGGGSGSGHGHGNGGGHGNGSKVKKKGGGWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGTFHGPERLRVRQYGKSCKEVTALYKSQEIQAHTGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKPEDVSVNMLFLVNGSPEPAAALLSPGLDINPERKRKGRSSVSRKSMSLDQLVVPENVFGLTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDSYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYDTSENKLQLKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTSSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSAEQPELDSNADEVVSTNHPPTPVEENFGTEGSRSASGYHNSPRHATIASATNSYFFDRISATWPEEKLVLAARNRSPRVSVDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4508 849 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Lja3g4508 849 PRINTS G protein beta WD-40 repeat signature 493 507 IPR020472 -
Lja3g4508 849 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Lja3g4508 849 MobiDBLite consensus disorder prediction 741 770 - -
Lja3g4508 849 PANTHER WD REPEAT DOMAIN 44 4 100 IPR040324 -
Lja3g4508 849 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 475 509 - -
Lja3g4508 849 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 4 100 - -
Lja3g4508 849 MobiDBLite consensus disorder prediction 108 144 - -
Lja3g4508 849 SUPERFAMILY WD40 repeat-like 355 685 IPR036322 GO:0005515
Lja3g4508 849 Pfam WD domain, G-beta repeat 470 505 IPR001680 GO:0005515
Lja3g4508 849 Pfam WD domain, G-beta repeat 646 683 IPR001680 GO:0005515
Lja3g4508 849 Pfam WD domain, G-beta repeat 359 391 IPR001680 GO:0005515
Lja3g4508 849 Pfam WD domain, G-beta repeat 511 548 IPR001680 GO:0005515
Lja3g4508 849 ProSiteProfiles Trp-Asp (WD) repeats profile. 475 515 IPR001680 GO:0005515
Lja3g4508 849 MobiDBLite consensus disorder prediction 245 341 - -
Lja3g4508 849 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 105 849 - -
Lja3g4508 849 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 549 - -
Lja3g4508 849 SMART WD40_4 468 506 IPR001680 GO:0005515
Lja3g4508 849 SMART WD40_4 642 683 IPR001680 GO:0005515
Lja3g4508 849 SMART WD40_4 551 589 IPR001680 GO:0005515
Lja3g4508 849 SMART WD40_4 602 641 IPR001680 GO:0005515
Lja3g4508 849 SMART WD40_4 509 548 IPR001680 GO:0005515
Lja3g4508 849 SMART WD40_4 353 392 IPR001680 GO:0005515
Lja3g4508 849 MobiDBLite consensus disorder prediction 298 323 - -
Lja3g4508 849 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 401 IPR001680 GO:0005515
Lja3g4508 849 PANTHER WD REPEAT DOMAIN 44 105 849 IPR040324 -
Lja3g4508 849 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 393 - -
Lja3g4508 849 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 549 IPR001680 GO:0005515
Lja3g4508 849 Gene3D - 313 415 IPR015943 GO:0005515
Lja3g4508 849 Gene3D - 447 708 IPR015943 GO:0005515
Lja3g4508 849 MobiDBLite consensus disorder prediction 108 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4508 Lja-Chr3 86899721 86905823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4508 472 680 U-box Gene Family AT2G33340 26.339 5.61e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4508 K20241 - gmx:100815065 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4508 3 86899721 86905823 Lja3g4508 3 86899721 86905823 ECH