Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4504 ATGTTTGTTATGGATCAAGACATCAAAGATGTTGAGTGTCAAACTATATACAAAGAGAGCGTGCATGAGGAAGAAGAACCTGACATATTGCACAAGGGAAAACGTCCTGTAATTCTCAAGTTTGATGATGTTGTCTACAAAATTAAGACCAAGAAAGGAGGACTCTTTGAGAAGAACACAAAATCAGAAGAGAAAGTGATCCTCAAAGGAGTGACAGGCACTGTTCAACCTGGTGAAATGCTAGCCATGCTAGGACCCTCAGGAAGTGGCAAAACAACTCTGCTCACAGCATTAGGAGGAAGACTAGGAGGAAAACTTCATGGATCCATAACTTACAATGGTGAACCCTTCACAAACACAATGAAGAGAAACACAGGCTTTGTTACCCAAGATGATGTTCTTTACCCCCATTTAACAGTAACTGAAACATTAGTCTTCACTGCTCTTCTTAGATTACCTAACACTGTCACAAAAGAACAGAAAGTGAAACATGCAAAAGATGTCTTAGAACAACTTGGTTTAACCAAGTGCAAGGATAGCATTGTTGGAAGCACAACTTTGAGGGGTGTTTCCGGGGGAGAGAGAAAAAGGGTTAGCATTGGGCAAGAATTGCTTATAAATCCAAGCTTGTTGTTTTTAGATGAACCTACCTCTGGGTTAGACTCAACCACAGCACAGAGGATTGTGTCAACTTTGTGGGAGCTTGCAAGAGGAGGGAGGACTGTTGTGATGACAATACACCAGCCTTCAAGTAGGTTATACTACTTGTTTCATAAAGTGTTGTTGCTGGCAGAAGGGAACACTTTGTATTTTGGGAAGGGATCTGAAGCTATTGAGTACTTTTCTAGTATTGGATATGCGCCAGCAATGGCCATGAACCCTTCAGACTTCCTTTTGGATCTTGCAAATGGTATCTACACTGATGGGTTAAACCAGGACCATGTCATAGATAAACAACATTTGATTTCCACATTTAAGAGCAAGTTTGATGCACAATTGAAGTCAATAAATCAAGAAATCAGTGACCCTGAAATTAGTCAGCGTAGATTTCAAGGCACAGGCTCTGGAAAGTGGCCAACGAGCTGGTCGCAGCAATTCTTTGTGCTGTTAAGAAGAGATGTCAAAGAGAGAAAGTATGAAGCTTTCTCTGCCCTGCGGATTAGTCAGGTCCTTGTGGTTGCTCTTATGTCAGGACTTCTGTGGTATAAGTCTGATATTTCACACTTACAGGATCAGATTGGGCTCCTCTTCTTCGTATCAGGCTTCTGGGGTTTCTTCCCACTCTTCCAAGCAATTTTCACCTTCCCACAAGAGCTAGTAATGATAGAGAAAGAACGCTCCTCAGGAATGTACAGGCTCTCCTCCTACTTCATGTCAAGAATGGTAGCTGACCTCCCCATGGAACTAGTCCTTCCAACCATATTCCTCCTCATAACATATTTCATGGCAGGTCTAAAGCACAACTTCGCCAGCTTCCTCTGCACCCTCCTAAGCCTCTTACTCAATGTCTTAGTTGCTCAAGGCCTAGGCCTTGCCATCGGGGCCGTCGTCCTCAATCAAAAATCCGCGGCCACGCTCGCCTCCGTGATCATGCTTTGCTTCTTGCTGGCCGGCGGGTTCTACGTTCAGAATGTTCCCGGGTTTATAGCCTGGGTGAAGTACATTTCTATAAGCTACTACACGTACCAGTTGTTTATTGTGTCTCAGTATCATGCTGGGGAAACATACCCTTGTTCTAGTGGTCAGTGTCAAGTGTCAGAGTTTCCTTCTATAAAGGAAATGGGGTTTAATTTTCACGGGCAAGCGCTAACTGCGGTGGCTCTTGTGGTGATGATGATTGGTTATAGAGTTATTGCTTATGTTGCTCTTATGAGGATTGGAGTGACTAAGAAATTGGCCTAG 1902 0.4343 MFVMDQDIKDVECQTIYKESVHEEEEPDILHKGKRPVILKFDDVVYKIKTKKGGLFEKNTKSEEKVILKGVTGTVQPGEMLAMLGPSGSGKTTLLTALGGRLGGKLHGSITYNGEPFTNTMKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNTVTKEQKVKHAKDVLEQLGLTKCKDSIVGSTTLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWELARGGRTVVMTIHQPSSRLYYLFHKVLLLAEGNTLYFGKGSEAIEYFSSIGYAPAMAMNPSDFLLDLANGIYTDGLNQDHVIDKQHLISTFKSKFDAQLKSINQEISDPEISQRRFQGTGSGKWPTSWSQQFFVLLRRDVKERKYEAFSALRISQVLVVALMSGLLWYKSDISHLQDQIGLLFFVSGFWGFFPLFQAIFTFPQELVMIEKERSSGMYRLSSYFMSRMVADLPMELVLPTIFLLITYFMAGLKHNFASFLCTLLSLLLNVLVAQGLGLAIGAVVLNQKSAATLASVIMLCFLLAGGFYVQNVPGFIAWVKYISISYYTYQLFIVSQYHAGETYPCSSGQCQVSEFPSIKEMGFNFHGQALTAVALVVMMIGYRVIAYVALMRIGVTKKLA* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4504 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 290 IPR003439 GO:0005524
Lja3g4504 633 Pfam ABC transporter 68 218 IPR003439 GO:0005524
Lja3g4504 633 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524
Lja3g4504 633 Pfam ABC-2 type transporter 247 314 IPR043926 GO:0140359
Lja3g4504 633 Pfam ABC-2 type transporter 364 569 IPR013525 GO:0016020|GO:0140359
Lja3g4504 633 Gene3D - 56 284 IPR027417 -
Lja3g4504 633 SMART AAA_5 77 275 IPR003593 -
Lja3g4504 633 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 21 627 - -
Lja3g4504 633 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 627 - -
Lja3g4504 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4504 Lja-Chr3 86845100 86849747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4504 67 251 Calmodulin-binding Proteins AT2G36910 27.979 8.74e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4504 3 86845100 86849747 Lja3g4504 3 86845100 86849747 ECH