Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4503 ATGACAATGGGGATTCCAGAGAAAGACCCTCTTTCTCAACTGAGTTTACCTCCTGGTTTCCGCTTTTACCCCACCGATGAAGAGCTTCTGGTTCAGTATCTCTGCCGCAAGGTCGCTGGTCACAATTTCACTCTACCCATCATCGCTGAAATCGACCTCTACAAGTTTGACCCATGGGTTCTTCCAAGCAAAGCGATTTTCGGTGAGAAGGAATGGTACTTCTTTAGCCCAAGGGACAGGAAGTACCCAAACGGGTCACGACCCAACAGGGTAGCTGGGTCTGGGTACTGGAAAGCCACCGGAACGGATAAGATCATCACCACCGAAGGTAGAAAAGTCGGTATCAAGAAAGCCCTTGTTTTCTATGTCGGCAAAGCGCCCAAAGGCACCAAGACTAACTGGATCATGCATGAGTATCGCCTTCTCGATTCTTCTCAAAAGAACACCGGCTCCAGGCTGGATGATTGGGTTTTATGTCGCATATACAAGAAGAATTCGAGCGCGCAGAGGGCGGCGTCAAACGGCACCGTTTCGAGCAGGGAGTACACGCAGTACAGCAACGGTTCGTCTTCCTCCTCCTCGTCGCACCTTGACGACGTTATGGAGTCTTTGCCGGAGATCGGCGGCTTCACGCGGCCACGTGTTGGCGGTGCGATGCAGCAGCAGCGTGAGGAGAGGGAGAGGCTCAACAACAATCTTCAGAGCGGTGGTGGTGGTGGATTGGGATTGGTGGATTGGTCTAACATTAACAACCCCTCTGTTCTGAACTCTTTGGCTGCGGCGGGGTTCGTTCCGGTAAATCAAGAGGCTCAGCAGGGCCAGAACCAGGGAATGATGAACTTTGGTGGTGGTGGTGGTGGTGGTGGTGGATACAATGACCTTTATGTCCCTTCGCTCCCAAATCTATGCCAAGTGGAGTCTTCGGAGAAGATGGGTAAACCGGTCGAGGAAGAGGTTCAGAGCGGTGTGAGAACCCAACAGGTTGAGAATCCCGGTTTTTTTGCCGGTTCAAATGGTTTTACGCAGGGGTTTTCAAACTCAGTGGACCAATATGGTTTCAGGTACCCAGCTCAGACGGTCGGGTTCGGTTTCGGGAAATGA 1101 0.5204 MTMGIPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHNFTLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSQKNTGSRLDDWVLCRIYKKNSSAQRAASNGTVSSREYTQYSNGSSSSSSSHLDDVMESLPEIGGFTRPRVGGAMQQQREERERLNNNLQSGGGGGLGLVDWSNINNPSVLNSLAAAGFVPVNQEAQQGQNQGMMNFGGGGGGGGGYNDLYVPSLPNLCQVESSEKMGKPVEEEVQSGVRTQQVENPGFFAGSNGFTQGFSNSVDQYGFRYPAQTVGFGFGK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4503 366 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Lja3g4503 366 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 3 341 - -
Lja3g4503 366 ProSiteProfiles NAC domain profile. 16 164 IPR003441 GO:0003677|GO:0006355
Lja3g4503 366 SUPERFAMILY NAC domain 12 164 IPR036093 GO:0003677|GO:0006355
Lja3g4503 366 MobiDBLite consensus disorder prediction 208 227 - -
Lja3g4503 366 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Lja3g4503 366 MobiDBLite consensus disorder prediction 170 199 - -
Lja3g4503 366 PANTHER NAC TRANSCRIPTION FACTOR 56 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4503 Lja-Chr3 86830079 86831915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4503 3 265 NAC Transcription Factor Family AT3G15500 63.158 2.36e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g4503 NAM 5.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4503 - - gmx:732651 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4503 3 86830079 86831915 Lja3g4503 3 86830079 86831915 ECH