Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4501 ATGGAGAGCACCGACTCCTCCACCGGCTCGCAGCAACAGCCGAACCTCCCTCCCGGCTTCCGGTTCCACCCCACCGATGAAGAGCTCGTCGTTCACTACCTCAAGAAAAAAGCAGCTTCTGTTCCTCTCCCTGTCGCCATCATCGCCGAGGTCGATCTCTACAAGTTCGATCCATGGGAGCTTCCAGCTAAGGCAACGTTTGGAGAACAGGAGTGGTACTTTTTCAGTCCCAGAGACCGGAAGTACCCGAACGGCGCGAGACCTAACCGGGCTGCGACGTCCGGGTACTGGAAGGCGACTGGGACTGATAAGCCTGTGTTGACCTCTAACGGAACTCAGAAAGTCGGTGTGAAGAAAGCCTTGGTTTTCTACGGCGGGAAGCCGCCGAGAGGGATCAAAACTAACTGGATCATGCATGAGTACAGGCTCGCTGATAACAAGCCGAATAATAGGCCTCCCGGGTGTGACTTGGGTAACAAGAAAAACTCTCTCAGGTTGGATGATTGGGTTCTGTGCCGGATCTATAAGAAGAGCAACACGCACAGATCACCGCTGGAACATGAGCGTGAAGAATCCATGGATGACATGATTGGAGGGGTTCCATCTTCCATCAACGTGGGCCACCACATGAATTCAAGGCTTCATCTTTCAAAAATGTCATCAAGCTACACCAACAGTGCATTGCTGGAGAATGATCACCACTTGTATGAAGGAATGATGCTGAGTAACGGCGCGATCTGTAGCGCTGCGAATGCGAGTAGCCTCTCAAACTCCAAGGCGGAGCTTTCAAACGCTTCCAAGAGGACCCTCTCGTCGCTGTACTGGAATGAGGATGATGTGGCTGGGACGTCGTCGTCGAACAAGCGGTTCGATTTGGATGGCAGTGTTGGTGGTGGTGATCATCATGGAAGTGGTATTGTGAGGACAGATCAAGAGAATGGCACTGCTACTTCTATTGCCTCTCTTCTTAATCAGCTTCCTCAAACCCCTTCGTTGCACCAACAAACAATGCTGGGGTCAATACCATATCAAATAACAGGAATGAATTGGTATGGATAG 1059 0.5127 MESTDSSTGSQQQPNLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSNGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPLEHEREESMDDMIGGVPSSINVGHHMNSRLHLSKMSSSYTNSALLENDHHLYEGMMLSNGAICSAANASSLSNSKAELSNASKRTLSSLYWNEDDVAGTSSSNKRFDLDGSVGGGDHHGSGIVRTDQENGTATSIASLLNQLPQTPSLHQQTMLGSIPYQITGMNWYG* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4501 352 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Lja3g4501 352 PANTHER NAC TRANSCRIPTION FACTOR 56 1 332 - -
Lja3g4501 352 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g4501 352 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Lja3g4501 352 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Lja3g4501 352 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Lja3g4501 352 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 332 - -
Lja3g4501 352 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4501 Lja-Chr3 86766229 86768428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4501 1 351 NAC Transcription Factor Family AT3G15510 51.842 1.88e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g4501 NAM 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4501 - - vra:106763825 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4501 3 86766229 86768428 Lja3g4501 3 86766229 86768428 ECH