Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4488 ATGATGTTATCACCTTCGCCATCTTCTCTCGCGAGGAGCTCGTTGGAGGAGATGCTTGATTCGATTCGCCGGAGAGATGATGAGGAGAAGCCGAAGGACTTGCCGCCGGCATTGCCGTCGCGGCCGACGTCGAGAGCTCGGCTTCCGCCGGCGAGGAGGACGTTGCCGAAGGGTTTAATGTTGGATGAGAAGGAAGATGCCAAGAAGAAGGGGCATAGCAGGAAAGGTAGTTTTGGGGGAAAGAAGATTAAGTTGGATTTTGAATCTCCTTATGTGGCGGAATCGGAGGAGAAGATTGTTGAAGAAGCGTTGACAGGTCCTGTTTCGACGTCTGCTGATGATTCTGCTGCTGCTTCTGTAGCTCCCCCATCCTTGGAATTGGAGGATGATAACGTTGCTTATTTCATTAAGAAGAAGCTTCATGTTTGGTGTAGGCAGCCAAAAGGGAAGTGGGGGCTAGGAACGATACAGTCAACTTCAGGAGAGGAAGCATCTGTTTCACTCTCCAATGGAAATGTTATGAGAGTGGCCAGAATAGAACTCCTACCAGCTAATCCGGATCTTCTAGAGGGTGTGGATGATCTTATACAGCTCAGTTATTTAAATGAGCCCTCAGTTCTTCACAATCTTCAGTTTAGATATTCTCAAGATATGATTTACAGCAAAGCAGGGCTGATTTTAATTGCACTCAATCCCTTCAAAGATATACCAATTTATGGAGATGATTATATCACAGCTTATAGGCAGAAATCTATCAATAGTCCTCATGTTTATGTTACGGCAGATGCAGCTTATAATGAGATGATGAGAGATGAAGTAAATCAGTCCATTATCATAAGCGGCGAGAGTGGCTCTGGGAAAACAGAGACAGCAAAAATTGCTATGCAATACTTAGCTGCTATTGGTGGGGGCAGTTGTGGGATAGAAGATGATATTATTCAGACAAATTTAATACTAGAAGCTTTTGGGAATGCGAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAGGCTGATCGAAATTCATTTCAGCATAACGGGGAAAATTTGTGGGGCTAAACTTCAAACCTTTCTATTAGAAAAGTCAAGAGTTGTTCAACTGGCTTGTGGCGAGAGGTCGTATCACATATTTTATCAACTTTGTGCTGGATCTTCACCTGATCTGAAAGATAAACTGAATCTAAGAGGGGCCAATGAATATAAATATCTTAATCAGAGTGACTGCATGACAATTGATGGTGTTGATGATGCAAAAAAATTTCATAGGCTGATGAAAGCATTGGATGCTGTTCAAATGTGCAAAGAGGATCAAGAGCTTGTCTTTAAGATGCTTACTGCAATACTGTGGCTCGGAAATATATCATTCCAAGTTACGGATAATGAAAATCACATTGAAGTGGTTAATGATGAAGCTGTAACCAGTGCTGCTTTGCTGATGGGTTGCAGTTCCCAGGAGTTAATGACAGCATTATCTACCCATAAAATCCAAGCTGGCAAGGACACTATTACCAAAACCTTGACGTTGCGGCAGGCAATTGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGTTTGTTTGACTGGCTTGTAGAGCAAGTTAACAAGTCACTTGAAGTGGGTAAACGACGAACTGGGAGATCCATATCTATCCTTGATATTTATGGGTTTGAATCATTCCAGAAAAACAGCTTTGAACAGTTTTGTATAAATTATGCCAATGAAAGGCTTCAACAACATTTCAATCGGCATCTGTTCAAACTTGAGCAGGAGGACTATGAATTAGATGGTGTTGATTGGACCAAGGTAGATTTTGAGGACAATCAAGAATGTTTAGATCTCATTGAGAAGAAGCCTCTGGGGCTACTCTCTTTGTTGGATGAGGAATCAAAGTTCCCCAGAGCCACTGATCTATCATTTGCCAACAAACTTAGGCAGCACCTGCACGCTAAACCTTGCTTTAAAGGGGAAAGAGGCAGGACTTTCAGTGTTTGCCATTATGCAGGGGAGGTTTTGTATGATACAAGCGGCTTTCTAGAAAAGAACAGAGATCCACTGCCTTCTGAGTCTATTCAACTACTGTCATCATGTAGTTGTAAACTACTTCAGTTGTTCTCGGAGATGCTTAACCAGTCTGATAAGCAATCAAATTCCCAGCACGTAGGGGCTCTGGACTCGCAAAGGCTGAGCGTTGGCACAAAGTTCAAGGGCCAATTATTCAAGTTGATGCATCAGTTGGAGAGCACCACACCTCACTTTATTCGCTGTATAAAGCCAAATACTAAGCAACTTCCTGGCGTATATGATGAAGATCTTGTCCTACAACAACTCAAGTGTTGTGGAGTTTTGGAAGTTGTTAGGATTTCAAGGGCTGGATATCCTACTCGAATGACACATCAAGAGTTTGCCAGAAGGTATGGGTTTCTACTTTCTGAGGCCAATGCAGCTCAAGATCCACTGAGCATCTCAGTTGCTGTTTTGCAACAATTTAATATCCCTCCTGAGATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTGGAGGATAGGAGAAAAAAAGTTCTGCGAGGAGTACTTGGGGCTCAAAAATGCATTCGTTGTCATCAAGCTCGCCGTTATTACCATGAGCTTAAGAGTGGAGCGACAACTTTACAATCATTTGTTCGCGGAGAAATGGCAAGAAGGAAATATGGTGTTATGGTGAAATCTTCTCTTACTATTTCTTCTGAAACAATGGAGGAGAGACAGGCAATCGTAGCACTACAATCTGCAATACGTGGGTGGCTGGTTCGTAAGCATACTGGTAGCTTGAATAGGTTCAAGAAATATCCTGGAAATCCAAAACCTAGACGAAAGTCACGAACGAAGATGCCGGAAGTGGAGCAGGAAGCATCCAAAGAGCATGCCCATAATCTGCCTTCAGCCTTGGAAGAGCTCCAAAGACGGGTTGTCAAGGCTGAAGCAACTATACAGCAAAAGGAACAGGAAAGTACAGAATTGAGAGAACGGTTAAAACAATTTGAGAAAAGGTGGATTGAATATGAGACAAAGATGAAAACAATGGAGGAGATGTGGCAAAAACAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAGAACCAGCCTTGCCTCAGAAATTGCCACTGGTCAGCAAGTGAGACATGATGTTGCATCACATTTCTGCTATGATTCTGAAGATGCGACTTCAATGGGATCTCGAACACCTCGAACGCCTGGTAGAACTCCAGGTAGAACGCCTGGTAACAGCACACCTTTGAAGTATTCTAGTAGCCTTTCTGAAGCTGGATTAGGGAGAGATGCTAACGGTGCTACGGCTGTAGTCAACAATCTAATGAAGGAATTTGAGCAGCGTAGACAGACCTTTGATGGTGATGTCAAGTCTTTGACTGACGGTAGAATTGAGCAATCTGCTTGCTCGAATTCCATTGAAGAACTTAGGAAACTCAAACATAGATTTGAGGGGTGGAAGAAAGAATACAAGGTTAGATTAAGGGAGGCAAAAGCAAGACTTTATAAATCAGGGAACTCAGATATGGATAAAAGTCGGCGAAAATGGTGGGGAAAGTTTAATAGATAA 3624 0.4274 MMLSPSPSSLARSSLEEMLDSIRRRDDEEKPKDLPPALPSRPTSRARLPPARRTLPKGLMLDEKEDAKKKGHSRKGSFGGKKIKLDFESPYVAESEEKIVEEALTGPVSTSADDSAAASVAPPSLELEDDNVAYFIKKKLHVWCRQPKGKWGLGTIQSTSGEEASVSLSNGNVMRVARIELLPANPDLLEGVDDLIQLSYLNEPSVLHNLQFRYSQDMIYSKAGLILIALNPFKDIPIYGDDYITAYRQKSINSPHVYVTADAAYNEMMRDEVNQSIIISGESGSGKTETAKIAMQYLAAIGGGSCGIEDDIIQTNLILEAFGNAKTSRNDNSSRFGRLIEIHFSITGKICGAKLQTFLLEKSRVVQLACGERSYHIFYQLCAGSSPDLKDKLNLRGANEYKYLNQSDCMTIDGVDDAKKFHRLMKALDAVQMCKEDQELVFKMLTAILWLGNISFQVTDNENHIEVVNDEAVTSAALLMGCSSQELMTALSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGVDWTKVDFEDNQECLDLIEKKPLGLLSLLDEESKFPRATDLSFANKLRQHLHAKPCFKGERGRTFSVCHYAGEVLYDTSGFLEKNRDPLPSESIQLLSSCSCKLLQLFSEMLNQSDKQSNSQHVGALDSQRLSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNTKQLPGVYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFARRYGFLLSEANAAQDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDRRKKVLRGVLGAQKCIRCHQARRYYHELKSGATTLQSFVRGEMARRKYGVMVKSSLTISSETMEERQAIVALQSAIRGWLVRKHTGSLNRFKKYPGNPKPRRKSRTKMPEVEQEASKEHAHNLPSALEELQRRVVKAEATIQQKEQESTELRERLKQFEKRWIEYETKMKTMEEMWQKQMASLQMSLAAARTSLASEIATGQQVRHDVASHFCYDSEDATSMGSRTPRTPGRTPGRTPGNSTPLKYSSSLSEAGLGRDANGATAVVNNLMKEFEQRRQTFDGDVKSLTDGRIEQSACSNSIEELRKLKHRFEGWKKEYKVRLREAKARLYKSGNSDMDKSRRKWWGKFNR* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4488 1207 CDD MYSc_Myo8 204 848 IPR036022 -
Lja3g4488 1207 PANTHER MYOSIN-2 ISOFORM X1 119 1205 - -
Lja3g4488 1207 SMART iq_5 884 906 IPR000048 GO:0005515
Lja3g4488 1207 SMART iq_5 921 943 IPR000048 GO:0005515
Lja3g4488 1207 SMART iq_5 861 883 IPR000048 GO:0005515
Lja3g4488 1207 MobiDBLite consensus disorder prediction 947 981 - -
Lja3g4488 1207 PRINTS Myosin heavy chain signature 220 239 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 PRINTS Myosin heavy chain signature 549 577 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 PRINTS Myosin heavy chain signature 602 630 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 PRINTS Myosin heavy chain signature 274 299 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 PRINTS Myosin heavy chain signature 317 344 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 MobiDBLite consensus disorder prediction 57 79 - -
Lja3g4488 1207 PANTHER MYOSIN 119 1205 - -
Lja3g4488 1207 Gene3D - 561 750 - -
Lja3g4488 1207 Gene3D Kinesin motor domain 189 793 IPR036961 -
Lja3g4488 1207 MobiDBLite consensus disorder prediction 960 981 - -
Lja3g4488 1207 MobiDBLite consensus disorder prediction 1074 1106 - -
Lja3g4488 1207 ProSiteProfiles Myosin motor domain profile. 190 860 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 Pfam IQ calmodulin-binding motif 888 905 IPR000048 GO:0005515
Lja3g4488 1207 Pfam IQ calmodulin-binding motif 923 941 IPR000048 GO:0005515
Lja3g4488 1207 MobiDBLite consensus disorder prediction 1 15 - -
Lja3g4488 1207 MobiDBLite consensus disorder prediction 1 79 - -
Lja3g4488 1207 Coils Coil 984 1018 - -
Lja3g4488 1207 ProSiteProfiles IQ motif profile. 922 950 IPR000048 GO:0005515
Lja3g4488 1207 SMART MYSc_2a 184 861 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 Gene3D - 373 429 - -
Lja3g4488 1207 MobiDBLite consensus disorder prediction 1074 1112 - -
Lja3g4488 1207 Gene3D - 869 912 - -
Lja3g4488 1207 ProSiteProfiles IQ motif profile. 885 914 IPR000048 GO:0005515
Lja3g4488 1207 MobiDBLite consensus disorder prediction 17 35 - -
Lja3g4488 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 910 IPR027417 -
Lja3g4488 1207 Gene3D Myosin VI head, motor domain, U50 subdomain 430 538 - -
Lja3g4488 1207 Pfam Myosin head (motor domain) 192 848 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g4488 1207 Gene3D - 794 861 - -
Lja3g4488 1207 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 137 186 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4488 Lja-Chr3 86607029 86618859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4488 1 1204 Myosins gene family AT5G54280 60.772 0.0 1510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4488 K10357 - gmx:100801876 1869.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4488 3 86607029 86618859 Lja3g4488 3 86607029 86618859 ECH