Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4486 ATGGCAGCAACATTGATGGCAGCCACCACTGCAAGCTCTGGCACTGTGATTAAACCAAGTCCTTTCCTTGGCCAAACCAAGGGTTCCAACTCCAACACTCTTAGAGATGTTGTCTCTATGGGAACTGGGAAATACACCATGGGAAATGATTTGTGGTATGGACCAGACAGGGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTAACTGGAGAATTCCCAGGTGATTATGGATGGGACACTGCTGGGTTATCTGCTGACCCTGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCCATGCTTGGAGCACTAGGCTGCATCACCCCAGAAGTACTAGAAAAGTGGGTTCGTGTGGACTTCAAAGAGCCAGTATGGTTCAAAGCAGGATCCCAAATTTTCTCAGAAGGAGGCCTTGACTACTTAGGCAACCCCAACCTCGTCCACGCACAAAGCATCCTCGCAGTGCTAGGCTTCCAAGTTCTTCTCATGGGTCTTGTCGAAGGCTTCCGCATCAACGGCCTTCCCGGAGTCGGAGAAGGCAACAACCTCTACCCTGGTGGCCAGTACTTTGACCCTCTCGGCCTCGCCGACGACCCTGCCACTTTCGCTGAGCTTAAAGTGAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGGAAAGGACCCTTGGAGAACCTTTTGGATCACCTTGATGACCCTGTGGCTAACAATGCCTGGGTCTATGCCACTAAGTTTGTGCCTGGGTCTTAA 813 0.5068 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4486 270 SUPERFAMILY Chlorophyll a-b binding protein 51 267 - -
Lja3g4486 270 Gene3D Chlorophyll a/b binding protein domain 59 263 - -
Lja3g4486 270 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 10 270 - -
Lja3g4486 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 10 270 IPR001344 GO:0009765|GO:0016020
Lja3g4486 270 Pfam Chlorophyll A-B binding protein 69 236 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4486 Lja-Chr3 86602513 86604370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4486 15 269 Chloroplast and Mitochondria Gene Families AT2G05070 70.076 1.48e-125 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4486 K08914 - nnu:104612608 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4486 3 86602513 86604370 Lja3g4486 3 86602513 86604370 ECH