Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4484 ATGGCCACCTCCCCCACCACCCACACTCTCTCTCACCACTCACGTGTTTCACACATGCACCACCACTACTATACCACCTCCTCCTCCGACGAGTTAGACCTCAAGGACAGCGACATTGAGGAAGATGACACCGAGGAGGAGGAGGAGGAGGTGGTGGAGAAAGGAGGAGGAGCCACCAGCGGCAAGGTGGTTGTTTCATCATCACGGTGGCGTGACCCTAGAGGCAAATGGGTGAAAGAATGGAACAGGATGTTCCTACTAGTGTGCGCCACCGGATTATTCGTGGACCCGCTGTTCTTCTACGCGCTGTCGATGAGCGACACGTGTATGTGTCTCTTCATCGACGGCTGGCTCCTCATCACCGTCACCGTGATCCGCTGCATGACGGACGCGTTGCACCTCTGGAACATGTGGTTGCACTTCAACATGGCCAGACCAACCACCGGAACTTCCTCCTTGTCTTTTCCAGCTGCTGTCACCACCACCACCTTACGTGGCGGCTCCTTTGCGATTCATTATCTTAAGGCTAACACCGGTTTCTTCTTTGACCTCTTTGTCATCCTTCCAATTCCCCAGATTGTGCTATGGATAGGGATTCCATCTCTGTTGGAGAAAGGCTCAATTGCGATGGTGACGACGGTGTTCTTAACAATGTTCCTCTTTCAATACCTTCCCAAGATTTATCACTCAGTTTGCATCTTGCGCCGCATGCAAAACCTCTCCGGCTACATTTTTGGCACTGTTTGGTGGGGTATCTCGCTCAACCTGATCGCATATTTTGTCGCTTCCCATGCAGCGGGTGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAACCAAGTGCCTGCAAGAGCAATGTGGGAATGCCCCTGGTTGTAGCCTTAAAACCCTGTGTTGCCAAAAGCCTATATACTATGGAACCACCAACTTGGTGATGAGGGACAAAACAAGGTTGGCTTGGGCACAGAATAGGGAAGCAAGGTCCACATGCTTGGATAGCCCTGATAACTACGACTATGGTGTTTATGAATGGACTGTTCAGCTCGTAACCAATGATAGTCGATTGGAAAAGATACTCCTACCTATCTTCTGGGGCCTCATGACTCTTAGCACATTTGGGAACCTAGAGAGCACAGCGGAACGGATAGAAGTGATTTTCAACATTATTGTGGTCACTGCTGGCCTCATTCTGGTCACCATGTTAATAGGAAATATCAAGGTGTTTTTAAGTGCTACAACATCAAAGAAGCAAGCGATGCAGTTAAGGATGAGGAACCTTGAATGGTGGATGAGAAAGAGGCAGTTGCCGCAGGGGCTCCGGCAGCGTGTGCGTAACTATGAGCGGCAGCGTTGGACTGCTATGCGTGGGGTTGATGAATGCCAGATGATCAGAAATCTCCCTCAGGGGCTCAGAAGGGACATCAAGTACCATCTCTGTTTGGATTTGGTCAGACAGGTGCCACTGTTTCAGCATATGGATGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCTCTTGTGTTCACAAAGGGAGAAACGATAACTAGAGAGGGAGACCCGGTTAAGAGAATGCTATTCGTGGTAAGGGGCCACCTTCAGAGCAGCCAAGACCTACGAGACGGGGTGAAAAGTTACTGCACCTTAGGCCCCGGGAACTTCAGTGGCGACGAGCTCCTCTCATGGTGTCTAAGAAGGCCGTTCATAGAGCGTCTTCCACCGTCCTCAGCCACTCTGGTGACGCTCGAAACCACCGAAGCATTCGGGCTTGAAGCGGAGGACGTGAGGTATGTGACACAGCATTTCAGGTACACCTTCATGAAGGAAAAGGTTAAGAGAAGCGCGAGGTATTACTCGCCCGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAACTAGCTTGGAGGAGGTACAAGCACAGGTTGAGTTTGACATCTTTGTCATTTATAAGGCCCCGGAGGCCGGCGTCGAGGTGCACTTCCATGGAGGAGGACAGGCTTCGCCTTTATACGGCTTTGTTAACCTCGCCAAAGCCTAATGACCAGGAGGAATATGATGACTTTGACTTTTCATAG 2073 0.5065 MATSPTTHTLSHHSRVSHMHHHYYTTSSSDELDLKDSDIEEDDTEEEEEEVVEKGGGATSGKVVVSSSRWRDPRGKWVKEWNRMFLLVCATGLFVDPLFFYALSMSDTCMCLFIDGWLLITVTVIRCMTDALHLWNMWLHFNMARPTTGTSSLSFPAAVTTTTLRGGSFAIHYLKANTGFFFDLFVILPIPQIVLWIGIPSLLEKGSIAMVTTVFLTMFLFQYLPKIYHSVCILRRMQNLSGYIFGTVWWGISLNLIAYFVASHAAGACWYLLGIQRATKCLQEQCGNAPGCSLKTLCCQKPIYYGTTNLVMRDKTRLAWAQNREARSTCLDSPDNYDYGVYEWTVQLVTNDSRLEKILLPIFWGLMTLSTFGNLESTAERIEVIFNIIVVTAGLILVTMLIGNIKVFLSATTSKKQAMQLRMRNLEWWMRKRQLPQGLRQRVRNYERQRWTAMRGVDECQMIRNLPQGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVKRMLFVVRGHLQSSQDLRDGVKSYCTLGPGNFSGDELLSWCLRRPFIERLPPSSATLVTLETTEAFGLEAEDVRYVTQHFRYTFMKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLSLTSLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNDQEEYDDFDFS* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4484 690 CDD CAP_ED 488 596 IPR000595 -
Lja3g4484 690 Pfam Cyclic nucleotide-binding domain 508 597 IPR000595 -
Lja3g4484 690 Gene3D Helix hairpin bin 409 479 - -
Lja3g4484 690 SMART cnmp_10 488 617 IPR000595 -
Lja3g4484 690 MobiDBLite consensus disorder prediction 25 60 - -
Lja3g4484 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 16 681 - -
Lja3g4484 690 SUPERFAMILY cAMP-binding domain-like 414 604 IPR018490 -
Lja3g4484 690 MobiDBLite consensus disorder prediction 34 52 - -
Lja3g4484 690 Gene3D Jelly Rolls 486 604 IPR014710 -
Lja3g4484 690 ProSiteProfiles cAMP/cGMP binding motif profile. 488 598 IPR000595 -
Lja3g4484 690 SUPERFAMILY Voltage-gated potassium channels 72 410 - -
Lja3g4484 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4484 Lja-Chr3 86576728 86586082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4484 57 687 Ion Channels AT5G54250 73.396 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4484 K05391 - gmx:100800795 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4484 3 86576728 86586082 Lja3g4484 3 86576728 86586082 ECH