Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4479 ATGGCCAAGTCGAATTCTGGTGAAAAGAATGGAGTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCGTCGATTACATTCAGAAACATGGGCATGGGAAATGGAGAACCCTTCCCAAGAATGCAGGACTTAAAAGATGTGGAAAGAGTTGCCGGCTTCGCTGGGCTAACTATTTGAGGCCAGATATAAAGAGGGGGAAATTCTCTTTAGAAGAAGAAGAAGCCATCATCCAATTACACAGTGTATTGGGTAACAAATGGTCTACAATTGCTGCCAACTTGCAGGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACCCACATCAAAAAAAAGCTTTTGAAGATGGGGCTTGATCCAGTGACTCACACTCCACGCCTTGATGTCCTACAATTAGCTTCCATTCTAAACTCATCTTTATACAATAATTCAGCCCAGTTTAACAACCCTGGTCTTTTTGGAATGGAAAGGGTAGTGAATCCAAGCCAGCTTCAGCTACTAAATTTAGTCACCACTCTTCTATCATGTCAAAATACAAACCAAGATGTTTGGAATACTAATAATTACCAGCAAAATCAACTTGGTGGGAGCACACAATGGCAACATCAAACACAATGCTCCCAACCAATGCAGCTTGATAATTCTATCCATGCCTTCCAACCAAACCAGGTCAATGAAGAAAACCATTGTACTACATCTAATCCATTGCATATATTGGAACCACCCCAGCTCATGAAAACCAACTTAGAGCATCAAATATCTCCAATTGCTAGTCCTTTTAACCATCAAAACCCAATGCAAAATTTGTTGCAGTACAATGGAGGTTTCACATCGAATCGAAAACGGCCTGAACCATCATCAGCTACACAATCTTTCTCTTCGCTTTTATGTAATAGCGAGGGAATGCCGAATTTCAATTTAAGCTCACTTTTATCTTCCACGCCTTCATCTTCTAGCCCTAGTACCTTGAATTCATCATCTTCCACAACATTTGTCAAAGGAACCAATGAAGATGAAAGAGACACTTACGGCAACATGTTCATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA 1095 0.4037 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKLLKMGLDPVTHTPRLDVLQLASILNSSLYNNSAQFNNPGLFGMERVVNPSQLQLLNLVTTLLSCQNTNQDVWNTNNYQQNQLGGSTQWQHQTQCSQPMQLDNSIHAFQPNQVNEENHCTTSNPLHILEPPQLMKTNLEHQISPIASPFNHQNPMQNLLQYNGGFTSNRKRPEPSSATQSFSSLLCNSEGMPNFNLSSLLSSTPSSSSPSTLNSSSSTTFVKGTNEDERDTYGNMFMYNISNGLNDSGLL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4479 364 CDD SANT 69 112 IPR001005 -
Lja3g4479 364 Gene3D - 13 66 - -
Lja3g4479 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g4479 364 CDD SANT 16 61 IPR001005 -
Lja3g4479 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g4479 364 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 352 - -
Lja3g4479 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 352 - -
Lja3g4479 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g4479 364 SMART sant 66 114 IPR001005 -
Lja3g4479 364 SMART sant 13 63 IPR001005 -
Lja3g4479 364 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g4479 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g4479 364 Gene3D - 69 116 - -
Lja3g4479 364 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja3g4479 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g4479 364 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g4479 364 MobiDBLite consensus disorder prediction 314 336 - -
Lja3g4479 364 MobiDBLite consensus disorder prediction 314 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4479 Lja-Chr3 86546485 86548872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4479 1 236 MYB Transcription Factor Family AT4G21440 56.716 5.87e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g4479 Myb_DNA-binding 2.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4479 3 86546485 86548872 Lja3g4479 3 86546485 86548872 ECH