Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4470 ATGAGGCAAGCTGGTGCATATTCAGGTTTGTTGTGTGGTGGCATTTCAGGAAGAACAGGTCCTCATTCTCTTCCTTTGGCGAGGATCAAGAAGATTATGAAGAAGTCTGGGGAGGATGTTAAGATGATATCAGGGGAGTCTCCTATTATTTTTTCCAAAGCTTGTGAGATCTTCATTGAGGAGCTTACAAGAAGGTCATGGATCATGGCCATGCAAGGCAAAAGGAGAACTTTGCATAAAGATGATGTGGCCTCAGCTGTAATTGCCACTGATGTCTTCGACTTTTTGATCACTTTGGTTTCTGATTCTTCTGCTGGAAGTCCTTCAGATGATAGTGCTGCAAGTGACACCACCACCACGCAAATGGAAACTAGTTTGTAA 381 0.4331 MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDVASAVIATDVFDFLITLVSDSSAGSPSDDSAASDTTTTQMETSL* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4470 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Lja3g4470 126 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Lja3g4470 126 Gene3D Histone, subunit A 15 101 IPR009072 GO:0046982
Lja3g4470 126 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Lja3g4470 126 MobiDBLite consensus disorder prediction 102 126 - -
Lja3g4470 126 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4470 Lja-Chr3 86334019 86334412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4470 22 100 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.557 1.23e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja3g4470 CBFD_NFYB_HMF 3.2e-17 CL0012