Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4461 ATGGCAGATGAAGAATTTCAAGCTAGTGGAAACTGGTGGGACTCAGCAAGAAACTTGAGATTTTCGAGTGGGGCATCACAATCATCTTCCTCTAGCATCACCAACATGGGAAATTTTCCATGGCAATCTCAAGATATTGAAGAAGTGAAGCAAGATTCTTCCACTTCCATTGACCCCAAACTTCACATGATGGGTTTAGGCCTTTCATCCCAACCCATGGATTGGAATCAAGCATCTTTGTTACGAGGTGAGAAGGGAACAGAGAACTGCAGTTTCCGGTCGATGTTGCAAGAGAATTTGAACTCATCATCAAGTGAACAACAAATTTTGTTCACTCCAGAAGAGTCTTCAAGCAATGATGAATACAACAAGCAAGTAGTGAATAGGGGTAGTTTCTCTTTGGATCAAAACCAAGGATTGCTTTCTACTTTTCAGATTGATTCCTCCTCAGCTTTATATGGAAACCCATCATCAATGTTACAAGGACTCTTGGGACCTGAAAACAACAACAATATGGGTTTCCCACACTATGGTTCAAACTCCCATGAGGTTCCTCAATTCTTGAGAGCTTCACCTCCAAATCCACAACCACCACTCATGAGTAACCAGTTGCATTTCACCAACAACGCGCCGTTTTGGAACGCTTCTGAGGCTGCTGCTCCCATCAAAGATGTAAGATCCAGCTTCTTCCCCTCTATGCAACCCTCATTCTCCACACCAAATTTCCATGTGCAGTCAAAGAATATATCTGAAGTACTGAGGGACTCGGGTGTTGTGAGAAAGAAAAGTGGGAGTGAACCACCACCCAAGAGAACTCGTAACGAAACCCCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAAATGGGGGACAGAATCACTGCGCTCCAACAATTAGTGTCGCCTTTTGGAAAGACTGATACAGCATCGGTGCTCTCTGAAGCCCTTGAATACATCAAATTCCTCCATGAACAGGTTTTAAGCACGCCGTATATGAAAAGTGGAGCTCCAGTACAGATTCAACAGAGTTCTGGTAAATCAAAAGTAGGTGAAGGTCCAAAGCAGGATCTTAGAAGCAGAGGGCTATGCTTGGTGCCAGTTTCAAGTACATTTCCAATGACTCATGAAACTACAGTTGATTTTTGGACACCAACATTCGGAGGAGGAACTTCAAGATAA 1182 0.4332 MADEEFQASGNWWDSARNLRFSSGASQSSSSSITNMGNFPWQSQDIEEVKQDSSTSIDPKLHMMGLGLSSQPMDWNQASLLRGEKGTENCSFRSMLQENLNSSSSEQQILFTPEESSSNDEYNKQVVNRGSFSLDQNQGLLSTFQIDSSSALYGNPSSMLQGLLGPENNNNMGFPHYGSNSHEVPQFLRASPPNPQPPLMSNQLHFTNNAPFWNASEAAAPIKDVRSSFFPSMQPSFSTPNFHVQSKNISEVLRDSGVVRKKSGSEPPPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEALEYIKFLHEQVLSTPYMKSGAPVQIQQSSGKSKVGEGPKQDLRSRGLCLVPVSSTFPMTHETTVDFWTPTFGGGTSR* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4461 393 MobiDBLite consensus disorder prediction 101 121 - -
Lja3g4461 393 MobiDBLite consensus disorder prediction 256 281 - -
Lja3g4461 393 MobiDBLite consensus disorder prediction 22 50 - -
Lja3g4461 393 MobiDBLite consensus disorder prediction 22 55 - -
Lja3g4461 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Lja3g4461 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 331 IPR036638 GO:0046983
Lja3g4461 393 Gene3D - 284 330 IPR036638 GO:0046983
Lja3g4461 393 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 42 381 - -
Lja3g4461 393 MobiDBLite consensus disorder prediction 339 358 - -
Lja3g4461 393 CDD bHLH_AtbHLH_like 280 327 IPR045239 -
Lja3g4461 393 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4461 Lja-Chr3 86165479 86169554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4461 172 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 55.365 3.64e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4461 - - lja:Lj0g3v0283609.3 587.03