Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4460 ATGGAGGATAACACATTTGAAGATAAGAACGTTGTTGTTCCAGACGAACAACCAGAAATCTTTGAATCCTTTGTTTGCTGCGTTTGCCTGGATCTACTATACAAGCCCATCGTACTATCTTGCGGTCATGTTTCCTGTTTCTGGTGTGTCCACAAGTCAATGGATGGTTTGCGTGAATCTCATTGTCCAATATGCAGGCATCCATACTATCACTTTCCAACAATCTGTCAAATGTTTCATGTTTTGCTCCTTAAGATCTATCCTGTTGATTACCAGAGAAGAGAAAAGCAGACACTTGAGGAAGAAGAGAAAGAGGGCTATTTTTCCCCTCAATTTGATGCTGATACATGCGGATTACAAGTTATATTTGATCATAATGGGAGCTCGCCTTCGTGCACTACTGTAAATCCAGCATCCGACTCTTGCAGTGTGGAACCTTTTGAGCGCACTGAGCAATCAGGGTCTGCAACTCATAATAGAGATGAAGGCACCATCTATGCTGGAAACACTTCTGACAGAACATCTGAAGTTGAAGGAAAAAGATTACCTCAGAATCAGCACAGTCAGCAACTGAAAATAGTAGTTGCAGACTTAATGTGTACAATATGCAAGCAACTTCTCGTTCATCCTGTCGTTCTGAATTGTGGTCATGTATACTGCGAGACCTGTATCATCGACCTATCTGATGACATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCCAGAGGATTTCCAAAAGTTTGTTTAGCTTTGGATCACTTTATAGAGGAGCAATTTCCAGAAGAGTATGCACAACGTAGGGATGCCATTCAACTCGGCCAAATCAAAGTCAAACCCGAGACCTCTTCTTGTTCATTGGATAATGATAAAGGAGGAAAGATAGCATGGGAGTCTGATCCTGGTTTGATTGTTCACATGGGAGTTGGATGCGATTTTTGCGGGATGTACCCAATAACTGGGGACAGATATAGATGTGCTGATTGTAAGGAGAAGATTGGTTTTGATCTCTGTAGTTATTGCTATAAAACCCGTTCAAAGCTTCCAGGCCGATTTAATCAGCAACACACCCCTGAACACAAGTTCCAGCTTGTACAATGGTATGGGAGGGTTAGGGAACAGATGAATGGACAAGAAACTTCAGAATTAATAATTATCTCTGATGATCCTGCTTCGGATGATGATAGCGAAGATAACCAGGTTGATGATGGAGAAGATAACCAGAGTGACTCTGAAGCCAACCAGGCTGATGATGGAGAAGATAACCAGAGTGACTCCGAAGCCGCCAACTGA 1293 0.4223 MEDNTFEDKNVVVPDEQPEIFESFVCCVCLDLLYKPIVLSCGHVSCFWCVHKSMDGLRESHCPICRHPYYHFPTICQMFHVLLLKIYPVDYQRREKQTLEEEEKEGYFSPQFDADTCGLQVIFDHNGSSPSCTTVNPASDSCSVEPFERTEQSGSATHNRDEGTIYAGNTSDRTSEVEGKRLPQNQHSQQLKIVVADLMCTICKQLLVHPVVLNCGHVYCETCIIDLSDDMLRCQVCQSPHPRGFPKVCLALDHFIEEQFPEEYAQRRDAIQLGQIKVKPETSSCSLDNDKGGKIAWESDPGLIVHMGVGCDFCGMYPITGDRYRCADCKEKIGFDLCSYCYKTRSKLPGRFNQQHTPEHKFQLVQWYGRVREQMNGQETSELIIISDDPASDDDSEDNQVDDGEDNQSDSEANQADDGEDNQSDSEAAN* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4460 430 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Lja3g4460 430 CDD RING-HC 26 65 - -
Lja3g4460 430 Pfam RING-type zinc-finger 200 227 IPR027370 -
Lja3g4460 430 SUPERFAMILY RING/U-box 11 75 - -
Lja3g4460 430 MobiDBLite consensus disorder prediction 149 173 - -
Lja3g4460 430 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Lja3g4460 430 PANTHER UNCHARACTERIZED 12 427 - -
Lja3g4460 430 SMART zz_5 305 354 IPR000433 GO:0008270
Lja3g4460 430 ProSiteProfiles Zinc finger ZZ-type profile. 306 370 IPR000433 GO:0008270
Lja3g4460 430 SUPERFAMILY RING/U-box 193 261 - -
Lja3g4460 430 SUPERFAMILY RING/U-box 297 365 - -
Lja3g4460 430 Gene3D - 303 367 IPR043145 -
Lja3g4460 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 267 IPR013083 -
Lja3g4460 430 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 12 427 - -
Lja3g4460 430 SMART ring_2 26 65 IPR001841 -
Lja3g4460 430 SMART ring_2 200 237 IPR001841 -
Lja3g4460 430 Pfam Zinc finger, C3HC4 type (RING finger) 25 69 - -
Lja3g4460 430 Pfam Zinc finger, ZZ type 306 346 IPR000433 GO:0008270
Lja3g4460 430 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Lja3g4460 430 MobiDBLite consensus disorder prediction 387 430 - -
Lja3g4460 430 MobiDBLite consensus disorder prediction 388 424 - -
Lja3g4460 430 MobiDBLite consensus disorder prediction 149 180 - -
Lja3g4460 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4460 Lja-Chr3 86113087 86126553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4460 13 66 C3H Transcription Factor Family AT1G74990 34.545 3.52e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4460 - - aprc:113868764 554.288