Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4448 ATGTCTCTTCCAAGTAAAACCCCTCAGCAGCTGAAAGAAGGAGCAGCAGCAGCAAACTCATCCTCTTCTTCATGGAACAGCATAAACACCCACACAAACACTTTCCCTCCTTTAACTCTACACAGAAGCAAACTTGAAGATAGCGATGAAGATATGTTCACAGTTCCAGATGTGGAAGGCACGCCAATTAGTAGTGTTCATTCTGCACTGACACTTACTAATGGTAACCCCAATCAAAGTAATGTGGCTGATCCTCAATTTCAAACGGGCTTTTCCGGGAAGCGCCGCCGGGGAAGAAACCCTGCAGACAAGGAGCATAGACGCCTCAAGAGGTTGTTGAGGAACAGAGTCTCTGCTCAACAAGCTCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAATTGCAAGATAAAAATGCTGTCTTAGAAGAACAAATCTCAACTCTGATCAATGAGAACACTATGCTGCGTAAGGTTCTCATGAATGCAAGGCCAAAAGTTGATGAAAGCAGTAGCACAGAACAAAAGCAGGACCAGTTAAGTAAAAGCTAA 567 0.4356 MSLPSKTPQQLKEGAAAANSSSSSWNSINTHTNTFPPLTLHRSKLEDSDEDMFTVPDVEGTPISSVHSALTLTNGNPNQSNVADPQFQTGFSGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAVLEEQISTLINENTMLRKVLMNARPKVDESSSTEQKQDQLSKS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4448 188 MobiDBLite consensus disorder prediction 72 88 - -
Lja3g4448 188 SUPERFAMILY Leucine zipper domain 107 166 IPR046347 GO:0003700|GO:0006355
Lja3g4448 188 Pfam bZIP transcription factor 104 163 IPR004827 GO:0003700|GO:0006355
Lja3g4448 188 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 10 188 - -
Lja3g4448 188 SMART brlzneu 103 167 IPR004827 GO:0003700|GO:0006355
Lja3g4448 188 CDD bZIP_HY5-like 117 158 - -
Lja3g4448 188 MobiDBLite consensus disorder prediction 72 106 - -
Lja3g4448 188 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 10 188 IPR044280 GO:0000981|GO:0045944
Lja3g4448 188 Gene3D Single helix bin 126 167 - -
Lja3g4448 188 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 110 125 IPR004827 GO:0003700|GO:0006355
Lja3g4448 188 MobiDBLite consensus disorder prediction 168 188 - -
Lja3g4448 188 Coils Coil 123 157 - -
Lja3g4448 188 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 105 168 IPR004827 GO:0003700|GO:0006355
Lja3g4448 188 MobiDBLite consensus disorder prediction 174 188 - -
Lja3g4448 188 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4448 Lja-Chr3 86012830 86015441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4448 86 175 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.824 1.43e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g4448 bZIP_1 6.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4448 K16241 - gmx:100783826 271.937