Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4440 ATGGAAGGTCGTAGGAGGATGACACTCTATGATCAGATGGCAGCTGGGGAAACAAGCAGTCGTAGCTCACTAGCTAGCTTGATCTTCGGCGATGTTGTTATGGCTAACCAGAATTCCGAGGCTGGAGGTGAAGCAGAAGCCACCATGAACCGGAATCGAACTCTGTTAGATGTCATCCGAGAAGATGAGCCCAACAACATCAAGGATCGAAGGTCATGGAAAGCCTTGAAGGACAAGCTTTGGCTCAAGCGCGCTGGTGGCTCCGACTCGGCTTGGACTTCTACCACAGTTCACATTCCCATCCACAATGTTGATAGCCACGGCGGAGCCTCATCCCAATCCACCCGTCGCAACTCGGTTTCCTTCCAAGAATACCTTGACTCAGACGAGTCGACTCAGCCAGGCATGGATCACCAACAACCCAACGACGTCGTCCAAGAAAACCTTGACAATCCTCCAGTCGTTGGCGTCGCTAATTCCTCCGGCGAGGCTACGACGACGGTTGGGCTAGTGAACATGTCGCTAATGGAGATGTTAGAGGAGACAGAGGTGGATTTTGAAGTACGAGTCAATGGTGATGATGAAGATAATGATGACGAGTGTCAAAAACAAGGAGGAGGAGAAGAAGGAGAAGAAGAACAAGGGGGAGTTGAAGAAACGGGTGTGGTAGCGTATAATTGTTGTGTGTGCATGGTGAGGCATAAAGGTGCGGCGTTTATACCGTGTGGCCACACGTTTTGCAGGATGTGTTCAAGGGAGCTTTGGGTGAATAGAGGGAATTGTCCTCTTTGCAATCATTTTATATTGGAAATTCTTGATATTTTCTAA 828 0.4903 MEGRRRMTLYDQMAAGETSSRSSLASLIFGDVVMANQNSEAGGEAEATMNRNRTLLDVIREDEPNNIKDRRSWKALKDKLWLKRAGGSDSAWTSTTVHIPIHNVDSHGGASSQSTRRNSVSFQEYLDSDESTQPGMDHQQPNDVVQENLDNPPVVGVANSSGEATTTVGLVNMSLMEMLEETEVDFEVRVNGDDEDNDDECQKQGGGEEGEEEQGGVEETGVVAYNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVNRGNCPLCNHFILEILDIF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4440 275 ProSiteProfiles Zinc finger RING-type profile. 227 265 IPR001841 -
Lja3g4440 275 SMART ring_2 227 264 IPR001841 -
Lja3g4440 275 MobiDBLite consensus disorder prediction 128 149 - -
Lja3g4440 275 PANTHER OS01G0917900 PROTEIN 128 275 - -
Lja3g4440 275 PANTHER OS01G0917900 PROTEIN 2 131 - -
Lja3g4440 275 MobiDBLite consensus disorder prediction 190 217 - -
Lja3g4440 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 275 IPR013083 -
Lja3g4440 275 PANTHER OS01G0917900 PROTEIN 128 275 - -
Lja3g4440 275 CDD RING-HC 227 264 - -
Lja3g4440 275 PANTHER OS01G0917900 PROTEIN 2 131 - -
Lja3g4440 275 SUPERFAMILY RING/U-box 226 271 - -
Lja3g4440 275 Pfam Zinc finger, C3HC4 type (RING finger) 225 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4440 Lja-Chr3 85947678 85949720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4440 4 275 C3H Transcription Factor Family AT4G13100 38.129 8.86e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4440 - - gmx:100802736 230.72