Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4428 ATGGCTGTTCCAAAGGTGAATGAGAAGTTGCTTGAAGAGCTCGAAGTAATGGGATTTCCACAGGCACGAGCAACCAGAGCACTTTATTATTCCGGTAATGTCAGCTTAGAGGATGCTATAAATTGGACGATTGATCATGAGAATGACCCTGATATTGATGAGATACCATTGGTAGATATAGACATTGACATCGGATCCTCTCAGACATTCCCCACCACAGAACAAATGAGAATCAAAGCACAGAATTTAAGGAAACAAGAGCTTAAGAGGAGTGAGAATGAAGAAAAAATAAAGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAGAAACTCCTTGAAGCGAAGCGAATTGCTGAAGAAAATGAAAGAAAACGGAATTTATCCTTGAGAAAAGCAGAAAAAGAAGAAGAGAAACGAGCTCGGGAAAACATTCTCCAAAAATTAGAGCAAGATAAGTTGAATAGAAGGTCCAGACTTGGATTGCCTTTAGTAAATCAAGCAACTGTGACATCATCTGCTGTTGCAGTAAAGCAAGACAAGAATCCAAATTCGAAGCCTGTTTATCCAACTGTAAAAGTTGAGCACTTGAGAGAGTGTTTGAGGTCTCTAAAGCGTGCCCACCAGGATGAGCATACCAGAGTCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTAGAAATGTTGCCAAGAATCCCAAGGAAGAAAAGTACAGGAAGATCCGACTGAGCAACCCATTAGTCCGGGATAGAATTGGAAGTTTATATGGAGGTGTAGAGTTTCTCGAGCTCTGTGGTTTCGAGAGAACGGGTGACTTCTTGTATCTTCCTCATGAAAAAGTTGACATGGAACTACTAAATTCAGCTGGTTTTGTCTTAAACTCTGCAATGACAAATCCTTTCTTTGGACTTTTAAGCACTTAA 927 0.4056 MAVPKVNEKLLEELEVMGFPQARATRALYYSGNVSLEDAINWTIDHENDPDIDEIPLVDIDIDIGSSQTFPTTEQMRIKAQNLRKQELKRSENEEKIKEREREKERIQAGKKLLEAKRIAEENERKRNLSLRKAEKEEEKRARENILQKLEQDKLNRRSRLGLPLVNQATVTSSAVAVKQDKNPNSKPVYPTVKVEHLRECLRSLKRAHQDEHTRVRRAFETLLVYVRNVAKNPKEEKYRKIRLSNPLVRDRIGSLYGGVEFLELCGFERTGDFLYLPHEKVDMELLNSAGFVLNSAMTNPFFGLLST* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4428 308 Gene3D - 200 296 - -
Lja3g4428 308 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Lja3g4428 308 SMART PGNneu 218 279 - -
Lja3g4428 308 CDD UBA_PUB_plant 6 53 - -
Lja3g4428 308 Coils Coil 83 117 - -
Lja3g4428 308 SUPERFAMILY PUG domain-like 192 302 IPR036339 -
Lja3g4428 308 MobiDBLite consensus disorder prediction 82 107 - -
Lja3g4428 308 Coils Coil 119 156 - -
Lja3g4428 308 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Lja3g4428 308 PANTHER F13M7.16 PROTEIN 1 308 - -
Lja3g4428 308 PANTHER PUB DOMAIN-CONTAINING PROTEIN-RELATED 1 308 - -
Lja3g4428 308 Pfam PUB domain 216 283 IPR018997 -
Lja3g4428 308 Pfam UBA/TS-N domain 7 42 IPR015940 -
Lja3g4428 308 Gene3D - 8 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4428 Lja-Chr3 85723541 85728467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4428 1 306 C2H2 Transcription Factor Family AT1G04850 58.252 1.73e-102 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4428 K24348 - gmx:100781260 435.261