Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4420 ATGGAGTTAGTTTCAAGAGAAACAATCAAACCATCTACACCCACTCCTCCACACCTCAAAATTTATCCTCTTTCTTTCATAGATCATATTTTTTTCCGTAACTATGTCCCATCACTTTTCTTCTACACCTCATACGAGGTGGGACAACAATATGACGATATCCAAGCATGTAAACAAAGATCCAAAATTTCTGAGCTCAAGGAATCCTTATCTCAAGTTCTATCCAGATATTACCCCTTTGCAGGTACGTTCAGAGATCAGCTTTCTATTGAGTGCAACGATCAAGGTGCGTCATTTATAGTCACAAGAATCATAGGTACAAAGTTATCAACGATCCTCCAAAACCCCACCGAAACACTTATAGTAGCCATCCAGATTAATTGTTTTGCATGCGGAGGAATGGCAATTAGTGTATGTATGTGTCACAAAGTTGTTGACGCTGCTACCCTTTTCAACTTTGTAAATGATTGGGCCACCATGAACCGAGAAAAAGGAGAGTCGTTATTGTTGCCCTTGCCTTTACTTGACGGAGGAGTTTCACTATTCCCACAAGGCAACTTGCCTGTTTTCCCAGAACGTGTGTTTTGGAAAGACAAAACGGTATGTAGAAGATTTGTTTTTCACGCCTCGAAAATCAAGTCCCTCAAGGCCTTGGTGTCTTCCCACGCGGTGAAAAATCCCACGCGTGTTCAAGTTGTCATTGCTTGGATTTACAAGCGTGCAGTTTCTGCATTAGAGCTAACTTCTAAGACGACATCGTTCCATGTTGGTGTCAACCTGCGCAGAAGAATGGTTCCTCCATTGTCTGACAAGTGCATAGGGAACGTGGTTTGGGGGTATACTTTTGTGTTTAACCCGATAGTGGATAAGAGGGAAAGAGAATTACATGAGTTGGTAAGAAAAATAAAAGAAGGGTTATGTGAATTTTGTGACATATATCCAAAAAAATTTGGAGGAGATATTAAGGACTTGTCATTTATCTTCGAGTGTTTGAAACAAGCTACTTCAGTGCCAGAGCCAAGCAGTCCTGGTCATAAGGAGAACCAAATATTGTTCATTTCCAGTTGGTGCAAGTTCTCAATTTATGACGCTGATTTTGGGTGGGGCAAGCCGGTGTGGGTGACCACAAGTGGTTGTCCCGTGAGGAATTGTATAGTTTTGATGGATACAAGAGATGGGGATGGAATTGAAGCTATTGTGAATATGGAAGAGAAAGACATGGCCAAGTTTGAGCATGATATGGAGCTCCTTCAATATGCCTCTCTGAATCCAAACCCTGAAAGATGGGAGGGGTTTTCTCCTTCTCCGAAGGGAATGTTCTGGGGAAGTGTTTTTTTTAATAAGCAATGCACTATATATATTTAA 1365 0.4125 MELVSRETIKPSTPTPPHLKIYPLSFIDHIFFRNYVPSLFFYTSYEVGQQYDDIQACKQRSKISELKESLSQVLSRYYPFAGTFRDQLSIECNDQGASFIVTRIIGTKLSTILQNPTETLIVAIQINCFACGGMAISVCMCHKVVDAATLFNFVNDWATMNREKGESLLLPLPLLDGGVSLFPQGNLPVFPERVFWKDKTVCRRFVFHASKIKSLKALVSSHAVKNPTRVQVVIAWIYKRAVSALELTSKTTSFHVGVNLRRRMVPPLSDKCIGNVVWGYTFVFNPIVDKRERELHELVRKIKEGLCEFCDIYPKKFGGDIKDLSFIFECLKQATSVPEPSSPGHKENQILFISSWCKFSIYDADFGWGKPVWVTTSGCPVRNCIVLMDTRDGDGIEAIVNMEEKDMAKFEHDMELLQYASLNPNPERWEGFSPSPKGMFWGSVFFNKQCTIYI* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4420 454 Gene3D - 1 188 IPR023213 -
Lja3g4420 454 PANTHER F21J9.9 3 426 - -
Lja3g4420 454 Gene3D - 197 421 IPR023213 -
Lja3g4420 454 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 3 426 - -
Lja3g4420 454 Pfam Transferase family 2 112 - -
Lja3g4420 454 Pfam Transferase family 118 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4420 Lja-Chr3 85563329 85565216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4420 9 411 Monolignol Biosynthesis Gene Families AT5G48930 22.321 4.40e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4420 - - lja:Lj3g3v0730030.1 629.402