Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4400 ATGGAAAGATATAAAATTTTGAGAGAGCTTGGAGATGGCTCTTGCGGTCATGTATATAAAGCCCGTGATATGAGGAGTTACGAGATTGTTGCTGTCAAAAGATTAAAAAGAAAGTTTTCCTTCTGGGAAGAATGCACAAATTTAAGAGAAGTTAAGGCCCTTCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAGCTGTTTTTCATTTTTGAATACATGGAATGTAATCTTTATCAATTAATAAAAGAGAGAGAAAAGCCCTTTTCAGAGGAACAGATACGGTGCTTTATGAAACAATTGCTGCAAGGACTTAGTCACGTGCACAAGAGAGGATATTTTCACCGTGATTTAAAACCTGAAAATTTGCTGGTGACAAATGATGTTCTTAAAATTGCTGATTTTGGACTGGCTAGAGAAGTTTCATCATTGCCTCCATATACTCAATATGTCTCTACACGGTGGTACCGAGCTCCAGAAGTTTTGTTGCAGTCCTCATGTTATACTCCTGCTGTTGACATGTGGGCAGTTGGTGCTATATTAGTGGAGCTTTTTACTTTGACCCCCATATTTCCGGGTGAAAGTGAAATTGATCAACTGTACAAAATATACCAAATTCTCGGTATGCCAGATTCAACTGCTTTCAGCACAGGGGCAGACAACTATCGGCTATTGGACTTTGTTGGACATGAAGTTGTTACACCTGTGAAGCTTTCCGATATCATCCCAAATGCTGGCTTGGAAGCTATAGATTTGATCACGCAACTGTTATCATGGGACCCATCAAGAAGGCCAGATGCAGATCAGTCATTGCAACATCCGTTTTTCCATGTGGACACATGGGTTCCTCGTCCACTCAGTGATCCCCTTGAGCTGAAGCTGAGTAGCAAGAGGGCTAAGCCAAATCTTGAGCTGAAGCTGCAGGATTTTGGCCCGGAACCCGATGATTGTTTTCTTGGCTTGACATTAGCTGTAAAGCCCAGTGTTTCAACCTTTGATATGGTCCAAAATGTATCACAGGGTATGGGAGAGAATGTGCTATTTTGCCCAGATTTTAATGATCATTCAGACCGATCAGTGTTTTGGACATTATTGTCTCCTGATCAAAACGGAGTTCATAACTCAGCAGAGACTTCCTTGTCATTGTCATTTGGATCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCAGCGGGATTTTCATTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCTCTGTCTTCCCCTTGCGAGCGCGGCCACTGCCTTTGA 1308 0.4144 MERYKILRELGDGSCGHVYKARDMRSYEIVAVKRLKRKFSFWEECTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMECNLYQLIKEREKPFSEEQIRCFMKQLLQGLSHVHKRGYFHRDLKPENLLVTNDVLKIADFGLAREVSSLPPYTQYVSTRWYRAPEVLLQSSCYTPAVDMWAVGAILVELFTLTPIFPGESEIDQLYKIYQILGMPDSTAFSTGADNYRLLDFVGHEVVTPVKLSDIIPNAGLEAIDLITQLLSWDPSRRPDADQSLQHPFFHVDTWVPRPLSDPLELKLSSKRAKPNLELKLQDFGPEPDDCFLGLTLAVKPSVSTFDMVQNVSQGMGENVLFCPDFNDHSDRSVFWTLLSPDQNGVHNSAETSLSLSFGSVQHPPIGVPQSAGFSFQPLQPNILTTPFLALSSPCERGHCL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4400 435 Gene3D Transferase(Phosphotransferase) domain 1 82 284 - -
Lja3g4400 435 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 308 - -
Lja3g4400 435 CDD STKc_MAK_like 4 284 - -
Lja3g4400 435 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4400 435 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Lja3g4400 435 PANTHER CYCLIN-DEPENDENT KINASE F-4 1 308 - -
Lja3g4400 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Lja3g4400 435 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4400 435 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Lja3g4400 435 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4400 Lja-Chr3 85272077 85279838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4400 1 284 Core Cell Cycle Gene Families AT3G48750 36.986 1.49e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Lja3g4400 Pkinase 8.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4400 K08829 K08830 gmx:100792842 798.119