Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4393 ATGGAAAACGACGACGTTAAGATACCCTTGTTGCAACCACCACCACCACCACAAGACGCCGCCACCATTAAGACAGTTACGTTCCGAATAACTGACATCAAGTGCGCCTCTTGTGTCAATTCCATCGAATCCGCACTTAAAACCCTCGCCGGCATCAAAACCGTCGCGGTCTCGCCGCTCGATGGCCGCGCCGCCATCAAATTCGAACCCAACTTAATAACCGTGAAAAGGATAAAAGAGAGCATAGAGGAAACTGGATTTAAAGTTGATGAGGTTTATGACGACGAGCAAGAGATATCGGTGTGCCAAGTTAGGATTAAAGGGATGGCGTGCACGAGCTGTTCTGAGTCTATTGAGAATGCTCTCCAAATGGTTGATGGGGTGAAAAGGGCGATAGTTGGTCTGGCTTTAGAGGAGGCGAAAGTGCACTTTGATCCTAGCGTTACCGGTGCGGACAAGATAATCGAAGCGGTAGAAGATGCAGGGTTTGGAGCTGAGCTTATTAGCTCCGGGAATGATATGAACAAGGTGCATTTACTGCTCGAAGGGGTTGATTCGGAAGAAGATGCTAATGTTCTCGCGGCTTCTCTTGAGTTAGCTGCGGGGGTGAATTGTGTTGAGATGGATTTTTCGGAGCGTAGAGTTATAATTAGCTATGAGCCTGACGTTACCGGTCCGAGATATCTCATTGAGTGTGTTAAGGCTGCTAGTCGCGGCACCAAGATTTATGGAGCAACTTTGTATTCGCCTTCTGGACAAAGGGAAAGGGATAAAGTGAATGAAATTCGTGTGTATAGGGACCAATTTTTGTTCAGCTGCTTGTTTTCTGTTCCGGTGTTCGTGTTTGCCATGGTGCTTCCCATGCTTCCTCCGTATGGCAACTGGTTAAATTATAGAATCCATAACATGCTTACTCTTGGGTTGTTTTTAAGATGGATCCTTTGCACGCCCGTACAGTTCATTGTTGGCAAAAGGTTCTATGTGGGGTCATATCATGCACTGAGGAGAAGATCTGCTAACATGGATGTGCTGGTTGCACTAGGCACTAATGCTGCTTATTTTTACTCATTGTATATTGTAATAAAAGCACTGACTTCAGATACCTTTGAAGGACAAGATTTCTTTGAGACCAGTTCCATGTTGATATCCTTTATTCTATTAGGGAAGTATTTGGAGATGGTGGCTAAAGGAAAAACATCAGATGCTTTAGGAAAGCTGACTCAACTTGTTCCTGATAAAGCTTATTTGGTAACAATTGATGCTGATGGAAATGTCATCACGGAAACAGAAATTGAAACTCAACTTATACAAAAGAATGACATAATTAAGATTGTTCCCGGGGCCAAAATTCCCATTGATGGGGTTGTTATTAAAGGGCATAGCTATGCGAATGAAAGTATGATCACTGGGGAGGCAAAACCTGTTGATAAAAGTCCAGGAGACAAGGTTATCAGTGGAACCATCAATGAGAATGGCTGCATAGTAGTTAAAGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATTGTTCAACTAGTAGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCAGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGTGGCACTCTTAACTTGGTTGGGATGGCTCATTCCTGGAGAAGCTGGTATTTACCCTAAACATTGGATTCCAAAAGGCATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGCTAGTTGTTGCTTGCCCATGTGCTCTGGGCCTAGCAACACCAACTGCAGTCATGGTTGCTTCAGGCATTGGTGCTTCTCAAGGTGTGCTCATCAAGGGTGGAGATGCCCTGGAAAAGGCACACAAGGTAACAGTTGTTGTGTTTGATAAGACAGGGACGCTAACAGTAGGGAAGCCAGTGGTAGTTAGTGCAGTGCTGTTTTCTGAATTTTCCATGGAGGAGTTATGTGACATGGCGATTGCTGTTGAGGGAAGTAGCGAACACCCACTAGCAAAAGCTGTTGTGACACATGCAAAGAGCCTGCGACCGAAATTTGGTTCCTGCAATGAGGAAGTCCCGGATGTGAATGATTTTGAGGTACATATGGGAGCTGGGGTAAGTGGAAAGGTTGGTGATACAACTGTTTTAGTTGGAAACAAGAGACTGATGCATGCTTGTAATGTTCCAATATCTTCCGAGGTGGAGAAGTACATCTCTGAAAATGAAATTCTGGCTAGAACATGTGTTTTAGTTTCCATTAACGGAAAGATAGCTGGAGCATTCTCTGTAACTGATCCTGTAAAGCCAGAGGCTAAACGTGTCATATCATATCTACACTCTATGGGAATCTCAAGCATCATAGTAACTGGTGATAACCGTGCTACTGCAACTGCTATTGCAAAGGAAGTCGGTATTGATATGGTCTTTGCTGAGACAGATCCACTTGGCAAAGCTGATAGGGTGAAAGACTTGCAGGGGAAGGGAATGATTGTGGCAATGGTGGGTGATGGAATAAATGACTCGCCAGCCTTAGTTGCTGCTGATGTTGGCATGGCAATTGGTGCTGGAACTGACGTAGCTATAGAAGCAGCTGATATAGTTCTAGTCAAAAGCAGTTTAGCAGATGTTATTACCGCCATAGATCTATCTAGAAAAACCATGTCTCGTATCCGGCTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGAATGCCAATTGCTGCTGGTGTCTTATACCCGTTTACTGGAATCAGATTGCCACCATGGCTTGCTGGTGCATGCATGGCTGCTTCTTCTCTTAGTGTGGTTTCTTCGTCTCTTCTGCTGCAGTTCTATAAAAAACCTTTGCATGTAGAATCCATGTAA 2871 0.4417 MENDDVKIPLLQPPPPPQDAATIKTVTFRITDIKCASCVNSIESALKTLAGIKTVAVSPLDGRAAIKFEPNLITVKRIKESIEETGFKVDEVYDDEQEISVCQVRIKGMACTSCSESIENALQMVDGVKRAIVGLALEEAKVHFDPSVTGADKIIEAVEDAGFGAELISSGNDMNKVHLLLEGVDSEEDANVLAASLELAAGVNCVEMDFSERRVIISYEPDVTGPRYLIECVKAASRGTKIYGATLYSPSGQRERDKVNEIRVYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYRIHNMLTLGLFLRWILCTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSLYIVIKALTSDTFEGQDFFETSSMLISFILLGKYLEMVAKGKTSDALGKLTQLVPDKAYLVTIDADGNVITETEIETQLIQKNDIIKIVPGAKIPIDGVVIKGHSYANESMITGEAKPVDKSPGDKVISGTINENGCIVVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVVALLTWLGWLIPGEAGIYPKHWIPKGMDAFELALQFAISVLVVACPCALGLATPTAVMVASGIGASQGVLIKGGDALEKAHKVTVVVFDKTGTLTVGKPVVVSAVLFSEFSMEELCDMAIAVEGSSEHPLAKAVVTHAKSLRPKFGSCNEEVPDVNDFEVHMGAGVSGKVGDTTVLVGNKRLMHACNVPISSEVEKYISENEILARTCVLVSINGKIAGAFSVTDPVKPEAKRVISYLHSMGISSIIVTGDNRATATAIAKEVGIDMVFAETDPLGKADRVKDLQGKGMIVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLVKSSLADVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHVESM* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4393 956 SUPERFAMILY HMA, heavy metal-associated domain 171 242 IPR036163 GO:0046872
Lja3g4393 956 Gene3D - 396 518 - -
Lja3g4393 956 Pfam Heavy-metal-associated domain 104 163 IPR006121 GO:0046872
Lja3g4393 956 Pfam Heavy-metal-associated domain 27 88 IPR006121 GO:0046872
Lja3g4393 956 ProSitePatterns Heavy-metal-associated domain. 30 58 IPR017969 GO:0046872
Lja3g4393 956 Gene3D - 100 171 - -
Lja3g4393 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 373 621 IPR023298 -
Lja3g4393 956 Pfam E1-E2 ATPase 413 606 - -
Lja3g4393 956 Gene3D - 595 892 IPR023214 -
Lja3g4393 956 SUPERFAMILY HMA, heavy metal-associated domain 22 90 IPR036163 GO:0046872
Lja3g4393 956 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Lja3g4393 956 PRINTS P-type cation-transporting ATPase superfamily signature 760 771 - -
Lja3g4393 956 PRINTS P-type cation-transporting ATPase superfamily signature 628 642 - -
Lja3g4393 956 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Lja3g4393 956 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Lja3g4393 956 PRINTS P-type cation-transporting ATPase superfamily signature 782 792 - -
Lja3g4393 956 SUPERFAMILY Calcium ATPase, transduction domain A 428 514 IPR008250 -
Lja3g4393 956 CDD HMA 27 89 IPR006121 GO:0046872
Lja3g4393 956 PRINTS H+-transporting ATPase (proton pump) signature 835 851 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g4393 956 PRINTS H+-transporting ATPase (proton pump) signature 866 891 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g4393 956 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 14 953 - -
Lja3g4393 956 SFLD p-type atpase 610 887 IPR044492 -
Lja3g4393 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 630 636 IPR018303 -
Lja3g4393 956 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Lja3g4393 956 TIGRFAM TIGR00003: copper ion binding protein 104 164 IPR006122 GO:0005507
Lja3g4393 956 TIGRFAM TIGR00003: copper ion binding protein 26 89 IPR006122 GO:0005507
Lja3g4393 956 SUPERFAMILY HAD-like 626 941 IPR036412 -
Lja3g4393 956 ProSitePatterns Heavy-metal-associated domain. 106 135 IPR017969 GO:0046872
Lja3g4393 956 Gene3D - 635 713 IPR023299 GO:0000166
Lja3g4393 956 Gene3D - 714 766 IPR023299 GO:0000166
Lja3g4393 956 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 341 944 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lja3g4393 956 Pfam haloacid dehalogenase-like hydrolase 625 849 - -
Lja3g4393 956 SUPERFAMILY HMA, heavy metal-associated domain 99 171 IPR036163 GO:0046872
Lja3g4393 956 Gene3D - 19 90 - -
Lja3g4393 956 SFLD Haloacid Dehalogenase 610 887 - -
Lja3g4393 956 ProSiteProfiles Heavy-metal-associated domain profile. 101 167 IPR006121 GO:0046872
Lja3g4393 956 PANTHER ATP7, ISOFORM B 14 953 - -
Lja3g4393 956 ProSiteProfiles Heavy-metal-associated domain profile. 176 242 IPR006121 GO:0046872
Lja3g4393 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 381 912 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g4393 956 CDD P-type_ATPase_Cu-like 269 931 - -
Lja3g4393 956 CDD HMA 103 166 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4393 Lja-Chr3 85179202 85185895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4393 23 956 Primary Pumps ATPases AT1G63440 56.397 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4393 K17686 - gmx:100793894 1585.08