Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4389 ATGGACGAAGATTTCGATATTCCGGCGGCGGGGAACGACGACTTCGACTTCGCCGGCGCCGACGGCGGCAATCCGATGTTCAAGGTCGGCGATGAGAAGGAGATTGGGATTCAGGGCTTGAAGAAGAAACTCATCAAGGAAGGTGAAGGTTGGGATACCCCTGATGCTGGTGATGAAGTCCATGTTCATTATACTGGAACATTGCTTGATGGCACCAAATTTGATTCCAGCAGAGATAGGGGAACCCCTTTCAATTTCACGCTTGGACAAGGGCAAGTTATTAAGGGATGGGATGAAGGGATTAAAACTATGAAGAAAGGCGAAAATGCTCTTTTCACAATCCCAGCTGAACTAGCTTATGGTGAATCCGGTTCTCCTCCAACGATTCCCCCCAATGCGACTCTCCAATTTGATGTTGAGCTGCTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGAGGTATTTTTAAGAAGATACTATCCGAGGGGGAGAAATGGGAGAACCCCAAGGATCCTGATGAAGTTTTAGTTAAGTATGAAGCGCGTCTTGATGATGGAACGCTTGTATCAAAATCGGATGGAGTTGAGTTCACAGTCAAAGAAGGTCATTTTTGTCCTGCATTGTCAACGGCTGTTAAAACCATGAAGAAGGGAGAAAAAGTGATTTTGACAGTGAAGCCACAATATGGGTTTGGTGAGAAGGGGAAGCCGGCGCATGGTGATGAAGGTGCTATTCCACCTAACGCAACATTGCAGATTACTCTTGAGTTAGTTTCTTGGAAGACTGTTACAGATGTAACTGATGACAAGAAGGTCGTTAAGAAGATCCTCAAGGAAGGGGAAGGATTTGAGCGTCCAAATGAGGGGGCTGTTGTGAAATTGAAACTGATTGGGAAGCTTCAAGATGGTACTGTCTTTTTGAAGAAGGGCCATGATGATGAAGGGGAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTAATTGATGGGCTTGATAGAGGTGTGGTGACTATGAAGAAGGGTGAGGTAGCATTGTTGACTGTTGCGCCTGAGTATGCTTTTGGTTCATCACAGTCCCAGCAGGAATTGGCAGTGGTTCCTCCTAACTCCACCCTGTATTATGAGCTTGAGCTAGTGTCATTTGAGAAGGAGAAGGAATCTTGGGACATGAACACTCCAGAGAAGATAGAGGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCATTGTTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAGAAGGCTATCAAGTACATTGAGTATGATACCGCCTTTAATGAGGAGGAGAAGAAAAATTCCAAGGCCTTGAAAATTGCTTGCAATTTGAACAATGCAGCATGCAAGTTGAAGTTGAAAGATTATAAACAAGCTGAGAAATTATGTACAAAGGTTCTGGAACTTGAGAGCACAAATGTGAAGGCTCTCTATAGAAGGGCGCAGGCATATATCCAGTTGGCTGACTTGGATTTAGCTGAATTTGATATCAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTCAAGCTGGAGTATAAGACTTTGAAGGAAAAGATGAAGGAGTTCAATAAAAAGGAAGCAAAATTTTATGGAAATATGTTCAGCAAAATGAGCAAGCTAGACTCTCTCGACAGTAATAAACCAGCTTCCAAGGATGCCCAACCCATGAGTATCGACAGCACGGCATAA 1722 0.4367 MDEDFDIPAAGNDDFDFAGADGGNPMFKVGDEKEIGIQGLKKKLIKEGEGWDTPDAGDEVHVHYTGTLLDGTKFDSSRDRGTPFNFTLGQGQVIKGWDEGIKTMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILSEGEKWENPKDPDEVLVKYEARLDDGTLVSKSDGVEFTVKEGHFCPALSTAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAIPPNATLQITLELVSWKTVTDVTDDKKVVKKILKEGEGFERPNEGAVVKLKLIGKLQDGTVFLKKGHDDEGELFEFKTDEEQVIDGLDRGVVTMKKGEVALLTVAPEYAFGSSQSQQELAVVPPNSTLYYELELVSFEKEKESWDMNTPEKIEAAGKKKEEGNALFKAGKYARASKRYEKAIKYIEYDTAFNEEEKKNSKALKIACNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPNNRDVKLEYKTLKEKMKEFNKKEAKFYGNMFSKMSKLDSLDSNKPASKDAQPMSIDSTA* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4389 573 Pfam Tetratricopeptide repeat 483 516 IPR001440 GO:0005515
Lja3g4389 573 Gene3D - 33 147 IPR046357 GO:0003755
Lja3g4389 573 Gene3D Tetratricopeptide repeat domain 386 543 IPR011990 GO:0005515
Lja3g4389 573 Coils Coil 516 536 - -
Lja3g4389 573 SMART tpr_5 449 482 IPR019734 GO:0005515
Lja3g4389 573 SMART tpr_5 483 516 IPR019734 GO:0005515
Lja3g4389 573 SMART tpr_5 400 433 IPR019734 GO:0005515
Lja3g4389 573 SUPERFAMILY FKBP-like 267 400 - -
Lja3g4389 573 SUPERFAMILY FKBP-like 148 266 - -
Lja3g4389 573 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515
Lja3g4389 573 PANTHER PEPTIDYLPROLYL ISOMERASE 1 269 - -
Lja3g4389 573 PANTHER PEPTIDYLPROLYL ISOMERASE 272 382 - -
Lja3g4389 573 Gene3D - 148 262 IPR046357 GO:0003755
Lja3g4389 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 290 383 IPR001179 GO:0003755
Lja3g4389 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755
Lja3g4389 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 168 259 IPR001179 GO:0003755
Lja3g4389 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 142 IPR001179 GO:0003755
Lja3g4389 573 Gene3D - 263 384 IPR046357 GO:0003755
Lja3g4389 573 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 272 382 - -
Lja3g4389 573 SUPERFAMILY TPR-like 389 548 IPR011990 GO:0005515
Lja3g4389 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 145 IPR001179 GO:0003755
Lja3g4389 573 PANTHER PEPTIDYLPROLYL ISOMERASE 383 553 - -
Lja3g4389 573 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 383 553 - -
Lja3g4389 573 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 269 - -
Lja3g4389 573 MobiDBLite consensus disorder prediction 551 573 - -
Lja3g4389 573 SUPERFAMILY FKBP-like 36 158 - -
Lja3g4389 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 173 262 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4389 Lja-Chr3 85144052 85148802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4389 1 557 Calmodulin-binding Proteins AT3G25230 79.211 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4389 K09571 - gmx:100794411 989.949