Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4387 ATGGGGATTTCTAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGAAAGCAGAAGACCTGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGCCAGCCAGCTAACACTAAGCTATCTAGCAACAAGACTGTCAGGAGGATTCGTGTTAGGGGTGGTAATGTCAAGTGGAGGGCTCTGAGATTGGATACTGGAAACTTCTCATGGGGAAGCGAGACTGTTACTCGGAAAACCCGTCTTCTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTCCGAACTCAGACCCTTGTCAAAGGTGCTATTGTTCAGGTTGATGCTGCTCCATTCAAGCAGTGGTACCTCCAGCACTATGGTGTTGAAATTGGCAGGAAAAAGAAAACAGCTGCCAAGAAGGACTCTACTGAGGAAGGTGAGGCTGTTGCAGAAGACACCAAAAAGAGCAACCATGTGCAGCGAAAGCTGGAGAATCGCCAGAAAGATCGTACCCTTGATTCTCACATTGAAGAGCAGTTTGGCGGTGGACGATTGCTGGCCTGCATATCTTCTCGACCTGGTCAATGTGGCAGGGCTGATGGCTACATTCTAGAGGGTAAAGAGCTTGAATTTTACATGAAGAAACTCCAGAAGAAGAAGGGAAAGGGTGCTGCTTGA 654 0.4832 MGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKDSTEEGEAVAEDTKKSNHVQRKLENRQKDRTLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4387 217 Gene3D - 118 212 - -
Lja3g4387 217 Gene3D - 29 117 - -
Lja3g4387 217 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g4387 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lja3g4387 217 TIGRFAM eS8: ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lja3g4387 217 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Lja3g4387 217 CDD Ribosomal_S8e_like 5 196 - -
Lja3g4387 217 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Lja3g4387 217 MobiDBLite consensus disorder prediction 129 162 - -
Lja3g4387 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4387 Lja-Chr3 85138005 85140722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4387 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.437 3.45e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4387 K02995 - gmx:100813170 392.504