Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4386 ATGACAGAGGTTAGTGATAGTCAAGGGAAGGAGTTGGAGAAGAAGAAACTGCACAAGAAAAGTAAAAGGCCAAGAGAATGTGAAAGCAATGGAGGTGATGATTTAGTTGTCGGTGAAGACAGGCAAGGCAAGAAGATGAAGTTGAGCAAGAAAGTTGGTAGAACTGAAGATGAAGATGATGACCAAAGTAAGAAGATGGAGAAGAAGAAAAGGAAGAAGGAGAAGAAACTGAGTGAAGAAAGCAAACAAGATGAGTTTAAAAGCAATGAGGGTGAAGATGACGACCGAGGCAAGGAGATGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCGAAAGTAAGGAAGAGTATGACAAGTTGAGAAGCAATGAAGGTGCAGATGGTGACCAAGGCAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGCGAGTTTAAAAGCAATGAAGGCGAAGATGATGAACGAGGCAAGGAGATGAAAAAGAATAAGAAGAAAAAATCAACTGAAGAAAGCAAAAGTAAGGATGAGCATAACAAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGTGAGTTTAATAGCAATGAAGGTGATCCCTCTTCGGCTAGTGTTAAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGGAGTTGATGATCAAAGCAAGAAAAAGAAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTAGTATTCCTGCAGCACTAGGCGAAACATCCAAACCCAAACGAGTAACTTTTTCTGATCAAGTGGAGGTTTGTGGTGATGATGGTTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTGTGACTATATAAAGTCTCATGGTTTGGGAGATGAAGGTCTAAATATGATTCTCTATTGCATATCACATCCTGAAGTTAGAGGTTGTTGGAAGGAAATTGGAGCAGCCTTGCCTCATAGGCCTCATCAGAGTGTTTATTATCGTGCTCATATTATTTTTGAAAGGGATGAGGGGCGTAAGTGGACACCTGAAGAGCTTGATTTTTTACTCAAGGCCCAGGATCAACATGGAAGTGATTGGAAATTAATTGCTGAAGCTTTAAATAAACATCGTCTTCATGTGAAAGATACATGGCGGAGAATAAGACGAACCAATGCAAACAAAGGACGTTGGTCCCAAGATGAGCATCAAAGGCTATTTGATTTAGTAAACAAAGATCTATGCGCAAGAGCTGCAGAGGATTGTAGAAAAACAAAACATGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTGACGAGTTTGGCACTAGAGCTATTGCACTGTGCTGCATGAAGTGGTATCAGCAATTAACTTCACCAATGGTTGCTGATGGTATCTGGAGTGATAGTGATGACTACCGCCTGCTGAATGCTTTATATGCTTTGGATGCTTGCTCCATGGAGAGGTCTGGTGATGTATGTAGAAAACGATGGCACCAAATGGTCCGAAATGTTAGAGAACATGCGGGGAAGTCTTTTGCTGAGCAGGTGGAAATTCTTTCGAAGAGATATCGCCCTGACTTAGTGGAAGCAAGAGAGGCATTTGACAGCAAACCTGTAGTTGGTTGA 1701 0.4115 MTEVSDSQGKELEKKKLHKKSKRPRECESNGGDDLVVGEDRQGKKMKLSKKVGRTEDEDDDQSKKMEKKKRKKEKKLSEESKQDEFKSNEGEDDDRGKEMKKNKKEKLIEESESKEEYDKLRSNEGADGDQGKKMKKKKLSDKSKSKNSEFKSNEGEDDERGKEMKKNKKKKSTEESKSKDEHNKLRSNEGEDGDQGKKMKKKKLSDKSKSKNSEFNSNEGDPSSASVKEGDAKACGDVTGVDDQSKKKKTKKKAKAGTDESSIPAALGETSKPKRVTFSDQVEVCGDDGLVRGKRFTPEEDEKIKEAVCDYIKSHGLGDEGLNMILYCISHPEVRGCWKEIGAALPHRPHQSVYYRAHIIFERDEGRKWTPEELDFLLKAQDQHGSDWKLIAEALNKHRLHVKDTWRRIRRTNANKGRWSQDEHQRLFDLVNKDLCARAAEDCRKTKHGMLRDNVSWEAISDEFGTRAIALCCMKWYQQLTSPMVADGIWSDSDDYRLLNALYALDACSMERSGDVCRKRWHQMVRNVREHAGKSFAEQVEILSKRYRPDLVEAREAFDSKPVVG* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4386 566 SMART sant 293 364 IPR001005 -
Lja3g4386 566 SMART sant 366 413 IPR001005 -
Lja3g4386 566 SMART sant 487 528 IPR001005 -
Lja3g4386 566 SMART sant 416 483 IPR001005 -
Lja3g4386 566 ProSiteProfiles Myb-like domain profile. 412 481 IPR001005 -
Lja3g4386 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 368 415 IPR017930 -
Lja3g4386 566 SUPERFAMILY Homeodomain-like 367 424 IPR009057 -
Lja3g4386 566 MobiDBLite consensus disorder prediction 1 274 - -
Lja3g4386 566 Coils Coil 63 83 - -
Lja3g4386 566 Pfam Myb-like DNA-binding domain 370 428 - -
Lja3g4386 566 Gene3D - 371 410 - -
Lja3g4386 566 Gene3D - 411 485 - -
Lja3g4386 566 ProSiteProfiles Myb-like domain profile. 369 411 IPR001005 -
Lja3g4386 566 MobiDBLite consensus disorder prediction 23 215 - -
Lja3g4386 566 PANTHER GB|AAC33480.1 12 565 - -
Lja3g4386 566 CDD SANT 369 398 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4386 Lja-Chr3 85133650 85135379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4386 369 502 MYB Transcription Factor Family AT4G32730 26.471 3.90e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g4386 Myb_DNA-bind_6 7.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4386 - - lja:Lj0g3v0117159.3 786.563