Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4383 ATGGAAAACCAATTCTTCTTGAATGCTGGGGTGTCCCATCCTATGCAATTTGAACCTTCACCACCTCCAAATTCTTCAATGCCCACTTGGCAATCACTCTCCTCAGCCATGGAAATTCAATCAAATGTCCTCAATTATCCCTCAGAACAAACCCAAGATTTTTTCTACAGTTCCACCTGGGACAAGTCAACGGATCATCATCATCAACCCCTTCAGTTTGATTCTGCACTGAGTTCAATGGTTTCATCGCCTGCAGAATCAAATGAGAATTTTGTGATGAGGGAATTGATTGGAAAATTGGGAGCTGTTGGAAACTCTGATCATGAGATCTCACCACATTCTCACCACAATTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGCTCAACCACATTGCCCCAATGATGATGAACCACTTGGTCAAAGAGAATTTTCCAAAACCAATGGCTCTGAATTCAAGTGTTGCAGAATTCTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGCAGGAGTTTCAATGAAAGGAGGAGTACCACTAGTCAATTGGTGGTGAACAACAATGCTGAATTGGCACCTCAGAGATCTGCAACAGTTATAGAAAATGGAAGATTGCATAGAGTCTCAAGTAGCCCTTCACTCAAGACATTTGGATCTCAATTGCAGGATCATGAAAAGATGGAAGTGGCAAATTCTCAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGGGAATTAGGTGTGAAAGCTTCTGATACCAATCCCAGGAAAAGAAAAGCTTCCTCCAAAGGAAAAGCAAAAGAACCTTCAAACTATTTCAATCCTACAAAGGGTGTTGAAGGTAGTGGTGAAGAGACAAATGCAAAGAGAAGCAAGCAAAATGAGGGTGAGGGAAATGAAAATGACCCTACGAAGGTAGAGGAAGAGTCCAAAGGAGGTGCTAGCAATTCAGGGGAAGAGAAACAGAACAAGGGTAACACAACAAAACCTCCTGAGCCTCCAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGCCACAGTCTTGCTGAACGTGTACGAAGGGAGAAAATTAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCTGGTTGTAATAAGGTTACTGGGAAGGCACTCATGCTTGATGAGATTATAAACTATGTTCAGTCATTGCAACGCCAAGTAGAGTTCCTTTCTATGAAATTGGCATCAGTTAACACCAGGGTGGATTTTAGTATTGAGAGTCTTATCTCAAAAGATATGTTTCAATCAAATAGTTCTTTGGCAAACACAACATTTCCACTAGATTCCTCAGCACTAGCCTTTTATGGACACCAGCCTCAGCAAAACTCAGCTATCCATAATAACAACATTCCTAATAGAATTGTGGACCCATTAGATTCCTCTTTGTGCCAAAATCTTGGCTTGCATTTACCTCCCCTAAATGGATCCAATGAAGGTGCCTCTCAGTTTCCATTAACATTCTGTGAGGATGACCTCAACACCATTGTTCAGATGGGGTTTGGCCAAATTGCAAACAGGAAAACACCAGTACAGACCCAGAATTTCAACGGTTCAAATCAAGAGTCACATATGAAAATTGAGCTATGA 1650 0.4182 MENQFFLNAGVSHPMQFEPSPPPNSSMPTWQSLSSAMEIQSNVLNYPSEQTQDFFYSSTWDKSTDHHHQPLQFDSALSSMVSSPAESNENFVMRELIGKLGAVGNSDHEISPHSHHNSCYSTPLSSPPKLNHIAPMMMNHLVKENFPKPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNERRSTTSQLVVNNNAELAPQRSATVIENGRLHRVSSSPSLKTFGSQLQDHEKMEVANSQEESTISEQTPNGELGVKASDTNPRKRKASSKGKAKEPSNYFNPTKGVEGSGEETNAKRSKQNEGEGNENDPTKVEEESKGGASNSGEEKQNKGNTTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRVDFSIESLISKDMFQSNSSLANTTFPLDSSALAFYGHQPQQNSAIHNNNIPNRIVDPLDSSLCQNLGLHLPPLNGSNEGASQFPLTFCEDDLNTIVQMGFGQIANRKTPVQTQNFNGSNQESHMKIEL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4383 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 404 IPR011598 GO:0046983
Lja3g4383 549 MobiDBLite consensus disorder prediction 239 256 - -
Lja3g4383 549 MobiDBLite consensus disorder prediction 291 323 - -
Lja3g4383 549 MobiDBLite consensus disorder prediction 210 344 - -
Lja3g4383 549 CDD bHLH_AtBPE_like 344 429 - -
Lja3g4383 549 Pfam Helix-loop-helix DNA-binding domain 358 405 IPR011598 GO:0046983
Lja3g4383 549 PANTHER BHLH TRANSCRIPTION FACTOR 2 542 - -
Lja3g4383 549 SMART finulus 360 410 IPR011598 GO:0046983
Lja3g4383 549 Coils Coil 401 421 - -
Lja3g4383 549 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 542 IPR024097 GO:0006355
Lja3g4383 549 Gene3D - 351 425 IPR036638 GO:0046983
Lja3g4383 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 423 IPR036638 GO:0046983
Lja3g4383 549 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4383 Lja-Chr3 85083025 85086142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4383 1 508 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.444 2.79e-107 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g4383 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4383 - - lja:Lj0g3v0126899.1 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2050 1 23766266 23769671 Lja3g4383 3 85083025 85086142 PCT