Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4376 ATGCTTCGGTTTATTTCAAACGGGTCAAGCATTTTTCAGCCTTTTAGACACACTCCATTTATAAAAGCTTTGCAAGTGTTCACACCCACCACCTATTCGACGAATGTCCTAGCCGAAGTTGAGGTTGAACAGCAGGAATTAAGAAACAAATGGAAGGATGCTACTGAAGTTTTGAGTAAATGGGGTTGTAGTGATGATGATTTGATGAGAATATTTGCCCGTTGCCCTGCATTGCGCAATGCCGATCCTACTCAAGTTCAATCTAAACTATGCCTGCTGAGTGACCTGGGTTTTGGGGCATCTGAACTTGTGAAGATCACCAATTGTAGGCCTAGATTTTTCAGGACACGGATTAGCGATAGCTTCTTCGACAAAAGGCTTGCCTCTCTTATGTCATTATTTGAGTCGAAGGAGATGCTTCAGAAGGCCATTGTGAGAAATCCTTCTCTGATATGTGAGAATGGCTATGACATCGAAGCTACTGTTGCACTCTACGAAGAGTTAGGTGTGAGTAAAAGGGACTTGGTTCAGATGCTACTTCTGCGGCCAACGATCCTAGCGAGGACTTCCTTTGATGCTGAGAAGCTAGAATATATAAGCATGACAGGGCTGTCCAAGGAATCAAAGCTGTACAAATATGTGGTGACACTAATAGGCATCTCTCGCGTGGAAACTATTCGCGAGAAAGTATCGAAATTCACACAGTTTGGTTTTTCTAAGGATGAGGTATTTGGTCTTGTTGGGAGGCAGCCTCATGTTTTGACATTTTCAACTGATAAGGTTCAGAGGAACATGACTTTCGTTTTAGGCACAATGAAGCTTGAGGCTAAGATAATCCTTAAGTACCCATATCTCTTGTATGCTAATGTGGATACTGTTCTGAAGCCGCGATTGCTTTTAGCATGGAAGGTAGAAGAGATATGTCCTAATTTGCAAATCAAGGGAGTACCCACCATAGTTAGGGCACTGAGGATGACAGAGGAGAGGTTTCTACATTCGTTTATCAAATGCCAGCCCAAGGAAATTGCCAATGAATTAATGGAGTTCTATGAAAGGACAAAGGAAACAAGGAGATTAGCAGAGTCAGCAAAGAAGTGCATTACTAGAGGATTCCCTTTCTAA 1122 0.4234 MLRFISNGSSIFQPFRHTPFIKALQVFTPTTYSTNVLAEVEVEQQELRNKWKDATEVLSKWGCSDDDLMRIFARCPALRNADPTQVQSKLCLLSDLGFGASELVKITNCRPRFFRTRISDSFFDKRLASLMSLFESKEMLQKAIVRNPSLICENGYDIEATVALYEELGVSKRDLVQMLLLRPTILARTSFDAEKLEYISMTGLSKESKLYKYVVTLIGISRVETIREKVSKFTQFGFSKDEVFGLVGRQPHVLTFSTDKVQRNMTFVLGTMKLEAKIILKYPYLLYANVDTVLKPRLLLAWKVEEICPNLQIKGVPTIVRALRMTEERFLHSFIKCQPKEIANELMEFYERTKETRRLAESAKKCITRGFPF* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4376 373 PANTHER CGI-12 PROTEIN-RELATED 18 373 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 Pfam mTERF 130 331 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 Pfam mTERF 46 152 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 SMART mt_12 276 314 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 SMART mt_12 141 171 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Lja3g4376 373 Gene3D Transcription termination factor 3, mitochondrial 123 344 IPR038538 -
Lja3g4376 373 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 18 373 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja3g4376 mTERF 6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4376 K15032 - gmx:100799629 497.278