Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4375 ATGGCTTATTGGTCTGATGAAGAAAACAAACCAAAATGCATCTACGACGTGTTCATCAATTTCAGGGGAGAAGACACACGCAGAAACTTGGTTTCTCACCTCTATGCTTCCCTCTCCAATGCAGGAGCCTACACTTTCCTTGACAACGAGACGTTCCCCAAGGGAACAGAACTCGGTCCAGAACTCTTGCGAGCAATTGAAGCTTCTCGTGTATCCATCGTCGTTTTCTCGGAGAACTACACTGATTCTAATTGGTGTCTCATCGAGCTTTGCAAGATCATGGAATGCCATAGAGATCATGATCAGGTGGTTCTTCCCATATTCTATGGCATTGATCCATCAGTTGTGCGCCATCAGAAAGGTGCTTTCGGCAAAGCGTTGCAAGCAAGTGCTGTAAAAATTCGCACCGGAGAAGATATGAGCAAGTTGCTGTCGAGTTGGAGGAGTGCGCTAACAGATGCTGCGAATTTGTCTGGTTGGGATGTCACCGATTTCAGGAGTGAATCTGAACTAGTGAAGAAGATAGTAGAGAACGTTTTGACAAAATTAGATGTCACACTCTTGTCTATTACTGATTTTCCGGTTGGATTAGAATCACGCGTGCAAGAAGTGATTGAGTATATTGAAAGTCAATCAAGCAAAGTTTGTATGGTAGGGATTTGGGGAATGGGAGGGTTGGGTAAAACAACCACAGCCAAAGCCATCTACAACCAGATTCATCGAAGATTTGAGGATAGAAGTTTCATTGAAAATATTAGAAAAGTTTGTGAAAATAATAGCAGAGGGCATATGCATTTGCAAGAACAATTTCTTTCTGATGTCGTCAAGACAAAGGTGAAGAAGATTCGTAGCATTTCCACAGGGACAACTATGATTAAGAAAAGACTATCTGGAAGAAGGGCACTGGTTGTACTTGATGATGTGACCACATTTGAGCAATTAAAAGCCCTGTGTGGAAATCGTAAATGGTTTGGACAAGGAAGTGTTATAATTGTTACAACCAGAGATGTACGGGTACTTAGTTTACTTAAAGTCGACTATGTTTATAAAATGGAGGAAATGGATGAAGATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTGGAGAAGCAAGTCCGAGAGAAGACTTGATTGAACTCTCGAGAAATGTAGTTGCTTACTGTGGAGGGTTGCCACTAGCTCTGGAAGTCCTTGGATCTTACTTATATGAGAGGACAGAACAAGAATGGAAAAGTGTACTGTTAAAATTGAAGAGAATTCCCAATGATCAAGTGCAAGAAAAACTGAGAATAAGCTATGATGGTTTAAAGGATGATATGGAAAGGGATATATTTCTTGACATATGTTGTTTCTTCATTGGAAAGAACAGAGCCGATGCTGCAGATATACTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACTGTTCTCATAGAGCGGAGCCTCGTCAAAGTTGGAAAGAATAACAAGATTCAAATGCATGATTTGCTACGAGACATGGGTAGAGAAATAGTTCGTGGAAGTTCAGCAAAAGATCCTGGGAAGCGTAGTCGATTGTGGTTTCATGAGGATGTCCATGATGTTTTGACCAAAAATACTGGAACAGAAACTATTGAGGGATTGGTTTTGAAGTTGCAAAAAACCGGCAGAGTTTGCTTCAGTGCTAATGCTTTCAAGGAAATGAGAAAACTGAGACTTTTACAACTTGATTGTGTTGACCTCTCTGGAGACTATGGGCATCTTTCCCAAGAACTGAGATGGGTCTATTGGCAAGGATTTACTTTGAAATATATACCTGATGACTTATATCAGGGAAATCTAGTTGTTATAGACTTAAAGTACAGTAGTATTAAACAAGTTTGGAAGGAAACCAAGCTGCTGGAGAAGCTAAAAATTCTCAATCTCAGTCATTCCAGGTACTTGGAAAACACCCCAGATTTTTCGAAACTACCGAATCTAGAAAAGCTCATTCTAAAGGATTGTCCAAATTTGTCCGAGCTACACCAGTCCATCGGAGATCTCACTAATCTTCTTCTTATAAATTTGAAGGACTGTACAAGCCTTAGAAATCTCCCAAGGAAGATCTATCAGTTGAAATCTTTGACAACTCTCATCCTTTCAGGTTGTTCAAAAATTGATAAGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACACTTATTGCAAAAGATACAGCTATAAAGGAAGTTCCCTATTCAATACTAAGATTGAAAAGCATAGGATATATATCCTTATGTGGATATGAAGGATTAACACGTGATGTTTTTCCTTCTCTCATTCGGTCTTGGATGTCACCCACAATGAATCCCCTATCCCGCATTCCCCAATTTGGGGGCATGTCATTGGCTCTAGTTTCTAATTCGGGCAATGTATCATCGTGGCTTAGCAGCCTGTCCAAACTAAGAAGTGTTTGGATACAATGTCACTCGGAGATTCAAGTAACTCAAGAGTCAAGAAGAATTATTGATGATCAATATGATGCAAAGTGTACTGAATTGGAAACAACATCATCATATGCAGCACATATCTCAAGTGTTTCCTTGAGATCACTTTTGATTAGATTGGGAAGTTGCGACACAGTCATTGATACTCTTGGCAAGAGCATATCACAGGGATTGACAACCAATGATTCTAGTAATTTTTTCCTTCCGTGTGATAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTAAATTTTCAAGTTCCTGAGGATCGTGATTGTTGCTTGAAGGGAATAGTTTTATGTGCTGTTTATTCACCAACACCTGGAAATATGGCAACTGAATGTCTTACTAGTGTCCTGGTCATTAATTACACAAAATTCACCATTCAGGTCTACAAGCAAGATACTGTGATATCCTTTAATGATGAAGATTGGGAGAGTGTAATATCAAATCTAGATCCTGGTGACAATATGGAGATTGTTGTTGCTTATGGGTGTGGATTGACTGTTAAGGAGACAGCTGTGTATCTAATATATGGTCCGTCAATTACTATGAAAGTTGAGCCATCAATTACTATGCAAGTTGAACTTGAGCTGTCAGTTAATGTGAAAATGGAGGCATCACCTGAAGTGAACTTGCTTCCATCACTTGATGTGAAAATGGAGTCATCACCTGAAGTAAACATGCAGCCATCACCTAGAGTGAACATGCTTCCTTCACCTAACATGAAAATGGATCCATCAACTGAAATGAACATGCAGCCGTCACCTAATGTGAAATTGAAATCATCACCTAACAGGAAAATGGAGCCTTCACCAAAACCAAATAAAAATTTCTTGACAAGACTTGCAAAGAGAATGGGAGAATGTTCATGCTTGAACCAAACTTGA 3372 0.3953 MAYWSDEENKPKCIYDVFINFRGEDTRRNLVSHLYASLSNAGAYTFLDNETFPKGTELGPELLRAIEASRVSIVVFSENYTDSNWCLIELCKIMECHRDHDQVVLPIFYGIDPSVVRHQKGAFGKALQASAVKIRTGEDMSKLLSSWRSALTDAANLSGWDVTDFRSESELVKKIVENVLTKLDVTLLSITDFPVGLESRVQEVIEYIESQSSKVCMVGIWGMGGLGKTTTAKAIYNQIHRRFEDRSFIENIRKVCENNSRGHMHLQEQFLSDVVKTKVKKIRSISTGTTMIKKRLSGRRALVVLDDVTTFEQLKALCGNRKWFGQGSVIIVTTRDVRVLSLLKVDYVYKMEEMDEDESLELFSWHAFGEASPREDLIELSRNVVAYCGGLPLALEVLGSYLYERTEQEWKSVLLKLKRIPNDQVQEKLRISYDGLKDDMERDIFLDICCFFIGKNRADAADILNGCGLYADIGITVLIERSLVKVGKNNKIQMHDLLRDMGREIVRGSSAKDPGKRSRLWFHEDVHDVLTKNTGTETIEGLVLKLQKTGRVCFSANAFKEMRKLRLLQLDCVDLSGDYGHLSQELRWVYWQGFTLKYIPDDLYQGNLVVIDLKYSSIKQVWKETKLLEKLKILNLSHSRYLENTPDFSKLPNLEKLILKDCPNLSELHQSIGDLTNLLLINLKDCTSLRNLPRKIYQLKSLTTLILSGCSKIDKLEEDIVQMESLTTLIAKDTAIKEVPYSILRLKSIGYISLCGYEGLTRDVFPSLIRSWMSPTMNPLSRIPQFGGMSLALVSNSGNVSSWLSSLSKLRSVWIQCHSEIQVTQESRRIIDDQYDAKCTELETTSSYAAHISSVSLRSLLIRLGSCDTVIDTLGKSISQGLTTNDSSNFFLPCDNYPSWLAYKGEGPSVNFQVPEDRDCCLKGIVLCAVYSPTPGNMATECLTSVLVINYTKFTIQVYKQDTVISFNDEDWESVISNLDPGDNMEIVVAYGCGLTVKETAVYLIYGPSITMKVEPSITMQVELELSVNVKMEASPEVNLLPSLDVKMESSPEVNMQPSPRVNMLPSPNMKMDPSTEMNMQPSPNVKLKSSPNRKMEPSPKPNKNFLTRLAKRMGECSCLNQT* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4375 1123 Pfam TIR domain 15 191 IPR000157 GO:0007165
Lja3g4375 1123 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 1007 IPR044974 GO:0006952
Lja3g4375 1123 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 1007 - -
Lja3g4375 1123 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 160 IPR035897 -
Lja3g4375 1123 SMART till_3 14 157 IPR000157 GO:0007165
Lja3g4375 1123 MobiDBLite consensus disorder prediction 1050 1098 - -
Lja3g4375 1123 Pfam NB-ARC domain 198 427 IPR002182 GO:0043531
Lja3g4375 1123 Gene3D Ribonuclease Inhibitor 546 862 IPR032675 -
Lja3g4375 1123 SUPERFAMILY L domain-like 509 820 - -
Lja3g4375 1123 Gene3D - 353 437 IPR042197 -
Lja3g4375 1123 Gene3D - 189 348 IPR027417 -
Lja3g4375 1123 PRINTS Disease resistance protein signature 217 232 - -
Lja3g4375 1123 PRINTS Disease resistance protein signature 388 402 - -
Lja3g4375 1123 PRINTS Disease resistance protein signature 295 309 - -
Lja3g4375 1123 PRINTS Disease resistance protein signature 697 713 - -
Lja3g4375 1123 Gene3D - 9 188 IPR035897 -
Lja3g4375 1123 MobiDBLite consensus disorder prediction 1049 1105 - -
Lja3g4375 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Lja3g4375 1123 ProSiteProfiles TIR domain profile. 13 183 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4375 Lja-Chr3 85025145 85032248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4375 15 746 WRKY Transcription Factor Family AT4G12020 33.024 7.73e-94 328