Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4374 ATGGCGTCTTCATCCTGGAATCATCAATGGATCTACGACGTGTTCATAAACTTCAGAGGAGAAGACACCCGTCACAGCTTCGTTTCTCATCTCTATGCTGCACTCTCAAACGCTGGAATCAACACTTTCCTTGACGATGAGAAGCTTATAAAAGGATCCGAGCTGAAACCATCACTGTTGCGAGCTATAGAAGGTTCTCGTATATCCTTAGTTGTTCTCTCCACCAACTATACTTCATCAAGATGGTGTCTCGATGAACTCGACAAAATCATGGATTGCCGTGGAACTTATGGCCAGATTGTTATTCCCATTTTTTATGAAGTTGATCCATCACACGTACGTAAGGGTACGCATGCTTTTTCTTTGGCAGCAGCTGGAGGAGATGGATACGTAGAGGTAGACGTGGGGATGAAGTGGATGCGTGTGCTCAATCAAGTTGCAAATTTGTCTGGTTGGGATTTAAGCACCTTTAGGACTCAAGCTGAAGCAATTGACAAAATTGTTAAGGATGTTTTGACAAAGCTAGAAAAGGCGGTTTTGTTTATTACCGAGTATCCGGTTGGATTAGATGCTCAAGTGGAAGAAGTGATTGGGTTTAGGGAAGATCATACAAAAAATGTTTTTACAGTAGGGATCTGGGGAATGGGAGGATTGGGTAAGACAACCTTAGCCAAATCCATCTACAATAAAATTCATGGTGAATTTGAAGGTACAAGTTTTATTGAGAATATTAGAGAAGTTTGTGAAAATGATAGCAGAGGGCATATTCATTTACAAGAACAACTTCTTTCAGATGTCCTGGAAACACAAGTGAAGATACATAGTACTTCATTTGGGATAAGTATGATTCAGAAGAGACTTTCTGGAAGAAAGGCACTGGTTATACTTGATGATGTGACCACATTTGAGCAATTAAAAGCCGTATGTGCGAATCGTGAATGGTTAGGTGTCGGAAGTGTGCTAATTGTTACCACCAGAGATGTACACCTACTTAATTTAATTAAAGTTGATCGTGTCTGTAGAATGAAGGAAATGGACCAAAATGACTCCCTTGAGCTTTTCAGTTGGCATGCTTTCAGACAAGCAAGTCCGAGAAAAGACTTCATTGAACTCTCAAGAAATGTAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTACATGAGAGGAAGAAAAAAGAATGGAGAAGTGTATTGTCAAAACTGAAGATGATTCCCAATGATCAAGTCCAAGAGAAACTCAGAATAAGTTATGACGGTTTAAAGGATGAGCTGCAAAAGGATATATTTCTTGACATATGCTGTTTCTTTATTGGGAAAGGCAGAGCCTGTGTTACAGAGATATTAAATGGCTGTGGACTTCATGCTGATATTGGAATAACTGTCCTCATAGAGAGGAGCCTCGTGAAAGTTGAAAGGAATAACAAGCTTGGAATACATGATCTGGTTCGAGACATGGGAAGAGAAATTGTTCGTGAAAGTTCAGCAAAAGAGCCTGGGAAGCGTACTCGATTGTGGTCTCCTGAGGATGCACATGATGTGTTGACAAATAATACTGGAACAGAAACTGTTGAGGGATTGGTTTTGAACTTGCAAAGAACCGGTAGGATTTCCTTCAATGTTAATGCTTTCAAGGAGATGAAGAAATTGAGACTTTTGCAACTTGTTAGTGTTGAACTCAACGGAGGTTATAAGCACCTTTCCAAAGAATTGAAATGGGTCTATTGGAGAGAATGTGCTTTCAAATATATACCGTGTGACTTTTATCAGGGTAATCTAGTTGTTATGGAACTAAAACACAGCAATATTATACACGTCTGGAAGGAAGACAAGTTAATGAAGAAGCTAAAAATTCTCAATCTTAGCCATTCCAGGTACTTGAAAAAAACCCCTAATTTTTCAAAATTACCGAATCTAGAAAAGCTCATTATGAAAGATTGTCCAAGTTTGAGAGAGGTACACCAGTCCATTGGGGATCTGAGTAAGATTCTTCTAATAAATTTGAAGGACTGTACAAGCCTTGGCAATCTCCCAAGGAAGATCTATAAGTTGAAATCTTTGAAAACTCTTATCATATCCGGTTGTTCAATGATTGACAAGTTGGAAGAAGATATAGAGCAGATGGAATCCTTGACAGCACTGATAGCAAACGGCACAGCTATAAAAGAAGTGCCATATTCAATAGTAAGATTGAAAAGCATTGGATATATATCACTATGTGAATATGAAGGATTGTCAAGTGTTGTTTTTCCTTTTCTCATTTGGTCCTGGATGTCACCAACAACGAATTCCCTACCCCGTATTCCTCCATTTGGGGGCATGTCACTGTCTCTTGTTTCCATAAATGTGCCGAATGATAATTCTGGTTATATATTACCATTGCTTCCCAGCCTTTCAAATCTTAGAAGTGTTACGATACAATGCGGCTCAGAGATTCAACTAACTCAAGAATTGAAAAGATCTCTTGATGATCTATATGATGTCAATTTTGCTGAACTAGTAACAATATCACATGCATCACAAGTTTCAGAGTTTTCCTTGAGATCACTTTTGATTGGAATGGGAAGGAGCCACTTAATCATTGATACTCTTGGAAAAAGGATTGCACAGGGATTGGCATCCAATGATTCTTGCAATTTTTTCCTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATACAGGTGAAGGACCATCGGTATATTTTGAAGTGCCTGATGACAGATATTGTAGCATGAAGGGAATAATTTTATGTGTTGTTTATTCTTCAACACCTGAAAAAGTTGCAAGTGAAAACCTTATTAGTGTCTTGATTATTAATTACACAAAGTTCACCATCCAAATATTCAAGCGAGACACAGTAATGTCCTTTAATGAGGAAGATTGGCAGAGTGTAATATCAAATCTAGGTCCTGGTGACAATGTGGAGATTTTTGTTGCTTTTGGGCATGGATTGATTGTTAAAGAGACAGCTGTGTATCTAATATATGGTGAGTCAATTGCTATGGAAATTGAGCCATCAATTATTATGGAGGAGGATGAGTCATCAATTAAGGTGATTATAGAGCTATTGTCTGAAGTGAACTTGCTTCCATCAGTTATTGTGGAAATGGGGCCTTCACTTGAAATAAATGTGCAGTCATCACCTAATGTGGAAATGGAGCCTTCACCTGAAATGAGTGGCTGCTGTCACATATTGTGA 3219 0.3868 MASSSWNHQWIYDVFINFRGEDTRHSFVSHLYAALSNAGINTFLDDEKLIKGSELKPSLLRAIEGSRISLVVLSTNYTSSRWCLDELDKIMDCRGTYGQIVIPIFYEVDPSHVRKGTHAFSLAAAGGDGYVEVDVGMKWMRVLNQVANLSGWDLSTFRTQAEAIDKIVKDVLTKLEKAVLFITEYPVGLDAQVEEVIGFREDHTKNVFTVGIWGMGGLGKTTLAKSIYNKIHGEFEGTSFIENIREVCENDSRGHIHLQEQLLSDVLETQVKIHSTSFGISMIQKRLSGRKALVILDDVTTFEQLKAVCANREWLGVGSVLIVTTRDVHLLNLIKVDRVCRMKEMDQNDSLELFSWHAFRQASPRKDFIELSRNVVAYCGGLPLALEVLGSYLHERKKKEWRSVLSKLKMIPNDQVQEKLRISYDGLKDELQKDIFLDICCFFIGKGRACVTEILNGCGLHADIGITVLIERSLVKVERNNKLGIHDLVRDMGREIVRESSAKEPGKRTRLWSPEDAHDVLTNNTGTETVEGLVLNLQRTGRISFNVNAFKEMKKLRLLQLVSVELNGGYKHLSKELKWVYWRECAFKYIPCDFYQGNLVVMELKHSNIIHVWKEDKLMKKLKILNLSHSRYLKKTPNFSKLPNLEKLIMKDCPSLREVHQSIGDLSKILLINLKDCTSLGNLPRKIYKLKSLKTLIISGCSMIDKLEEDIEQMESLTALIANGTAIKEVPYSIVRLKSIGYISLCEYEGLSSVVFPFLIWSWMSPTTNSLPRIPPFGGMSLSLVSINVPNDNSGYILPLLPSLSNLRSVTIQCGSEIQLTQELKRSLDDLYDVNFAELVTISHASQVSEFSLRSLLIGMGRSHLIIDTLGKRIAQGLASNDSCNFFLPGDNYPSWLAYTGEGPSVYFEVPDDRYCSMKGIILCVVYSSTPEKVASENLISVLIINYTKFTIQIFKRDTVMSFNEEDWQSVISNLGPGDNVEIFVAFGHGLIVKETAVYLIYGESIAMEIEPSIIMEEDESSIKVIIELLSEVNLLPSVIVEMGPSLEINVQSSPNVEMEPSPEMSGCCHIL* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4374 1072 Pfam TIR domain 12 178 IPR000157 GO:0007165
Lja3g4374 1072 Gene3D - 179 339 IPR027417 -
Lja3g4374 1072 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 1002 IPR044974 GO:0006952
Lja3g4374 1072 PRINTS Disease resistance protein signature 209 224 - -
Lja3g4374 1072 PRINTS Disease resistance protein signature 379 393 - -
Lja3g4374 1072 PRINTS Disease resistance protein signature 286 300 - -
Lja3g4374 1072 PRINTS Disease resistance protein signature 688 704 - -
Lja3g4374 1072 Pfam NB-ARC domain 192 414 IPR002182 GO:0043531
Lja3g4374 1072 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Lja3g4374 1072 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 1002 - -
Lja3g4374 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 439 IPR027417 -
Lja3g4374 1072 Gene3D - 5 178 IPR035897 -
Lja3g4374 1072 SMART till_3 11 149 IPR000157 GO:0007165
Lja3g4374 1072 Gene3D - 344 428 IPR042197 -
Lja3g4374 1072 Gene3D Ribonuclease Inhibitor 524 856 IPR032675 -
Lja3g4374 1072 SUPERFAMILY L domain-like 534 842 - -
Lja3g4374 1072 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 152 IPR035897 -
Lja3g4374 1072 SUPERFAMILY "Winged helix" DNA-binding domain 415 521 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4374 Lja-Chr3 85019270 85023985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4374 12 737 WRKY Transcription Factor Family AT4G12020 31.048 5.16e-87 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4374 - - gmx:100813173 1263.83