Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4373 ATGTCTTCTTCATCCTCGACTCATCAATGGATATACGACGTGTTCATAAACTTCAGGGGAGAAGACACCCGCCACGGCTTCGTTTCACATCTCTATGCTGCCCTCTCAAACGCTGGAATCAAAACTTTCCTTGATAATAAGAGTCTTGAAAAGGGACAAGGGATGAAACCAGAACTGTTGCGTGCAATAGAAGGTTCTCGTATATCACTAGTTGTTCTCTCCAGCAACTATGCTTCATCTAGATGGTGTCTTGATGAACTCGTCAAAATCATGGAATGCCGCGCAACTTATGGGCAGCTGGTTTTTCCTATATTTTACCACGTTGTTCCAACTGACGTGCGTCATCAGAAGGGCGCTTTTGATTTGGAAGCAATTAAAAGAACATCAAGAAGTAACCTGAGGAGGTGGGGGGCTGCGCTCCTCGAAGTTTCAGGTTTTTCTGGTTATGAATTGAGCGTCGATAGGAGTGAAGCTGAAGCAATAAATGAAATTGTTAAAAACGTTTTCCGGAAATTAGATGCCAGACTGATGTCCCTTACCGAATTTCCGGTTGGATTATTATCCCGCTTGCAAGAAGTGATTAAGTTGATTGAAAGCAAATCGAGCAAAGTTTGTATGGTAGGAATTTGGGGAATGGGAGGGTTGGGTAAAACAACCACAGCCAAAGCCATCTACAATCAAATCCATTGCGAATTCATGTGTACAAGTTTCATTGAAAACATTAGAGAAGTTTGTGAGAATGGTAGCAGAGGGCATATGCATTTGCAAGAACAGCTTATCTCTGATGTCCTCGAAACTAAGGAGAAGATATATAGCATTGGAAGAGGGACAGCTATGATTAAGAAAATACTTTCTGGAAAAAGGGCTCTGGTTATACTTGATGATGTGACCACATCTGAGCAATTGAAAGCCTTGTGTGGAAATCGCGATTGGTTTGGATCAGGAAGTGCAATAATTATTACAACCAGAGATATGCGATTACTTAATTCACTTAAAGCTGACTATGTGTACGCAATGAAGGAGATGGATGAATATGAGTCGCTTGAGCTTTTCAGTTGGCATGCTTTTGGAGAAGCAAGTCCAAGAAAAAACTTCATTGAACTCTCAAAAAACGTAGTAGCTTATTGTGGAGGGTTGCCACTAGCTCTTGAAGTCCTTGGTTCTTACTTAAATGAGAGGAAAGAAAAAGAATGGAGAAGTGTATTGTCAAAACTAGAGAGAATTCCCAATGATCAAGTGCAAGAGAAACTCAGAATAAGTTACGATGGCTTAAGGGATGAGCTAGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGTAAAGACCGAGCCAATGTTACAGAAATATTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACTCTCCTCATAGAGAGGAGCCTCCTGCAAGTTGAAAGGAATAACAAGCTTGGAATGCATGATCTTGTTCGAGATATGGGAAGAGAAATTGTTCGTGAAAGTTCGACAAAAGATCCTGGGAAGCGCAGTCGGTTGTGGTTTCATGAGGATGTCCATGATGTTTTGACCAAAAATACGGGAACAGAAACTGTTGAGGGATTGGTTTTGAAGTTGCAAAACACCAGCAGAGTTTGCTTCAGTGCTAGTACTTTCAAGAAAATGAGAAAACTGAGACTTTTACAACTTGAATGTGTTGACCTCACCGGAGACTACCGGCATCTGTCCCGTGAACTGAGATGGGTCTATTGGAAAGGATTTACTTCCACATTTATACCCAATCACTTTTATCAGGGAAAGCTAGTTGTTTTAGAATTAAAGTACAGCAGTATTAAACACTTGAAAGTAGGAGAAATTTTGCTGGAGAAGCTAAAAATTCTCAATCTCAGTCATACAAAGTACTTGGTAAACACCCCTGATTTTTCAAAACTACCGAATCTAGAAAAGCTTATTCTAAAGGATTGCCCAAGTTTGATCGAGCTACACCATTCCATCGGAGATCTCAATAATCTTCTTCTTATAAATTTGGAGGGCTGTACAAGCCTAAACAATCTCCCAGGGAAGACCTATCAGTTAAAGTCAGTTAAAACTCTCATCCTCTCGGGTTGTTCGAAAATTGACAAGTTGGAAGAAAGTATAGTGCAGATGGAATCCTTGACAACACTTATTGCGAAAGATACAGCTATAAAGGAAGTGCCTCATTCAATATTAAGATTGGAAAGCATAGCATATATATCCCTATGTGGATATGAAGGATTAACACGTGACGTTTTTCCTTCTCTCATTCGGTCTTGGATTTCCCCAACAATGAATCCCCTTTACCGTATTCCCCTATTTGCAGGCAAGTCTTTGTCTCTAGTTTCTATGGATATACAGAATTATAGTTCAAGCATTTTATCTTCATGGCTTAGCAGCCTGTCAAAACTTAGAAGTGTTTGGATACAATGTCACTCGGAGATCCAACTAACCCAAAAGTCAAGAAGAATTCTTGATGATCAATATGATAAAAATTCTTTGGACTTGGAAGCATCATCATCATATGCATCACAAATATCAGATTTTTCCTTGAAATCACTTTTGATTAGATTGGGAAGTTGCCACACAGTCATTGATACTCTTGCCAACAGCATATCACAGGGACTGACAACAAACGATTCTAGTAATTTTTTCCTTCCGGGTGGTAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTGCATTTTCAAGTTCCTGAGGATCGTGATTGTTGCTTGAAGGGAATAGTTTTATGTGCTGTTTATTCATCAACACCTGAAAATATAGCGACTGAATGTCTTACAAGTGTCATGATAAATAATCGCACAAAATTCACCATTCAAATCTACAAGCAAGATACTGTAATGTCCTTTAATGATGAAGATTGGGAGAGTGTAAAATCAAATCTTGATCCTGGTGATAGTATCGAGATTGTTGTTTCTTTTGGGCGTGGATTGACTGTTAAGGGAACAGCTGTGTATCTAATTTATGCTCAGTCAATCAATATGGAAATTCAGCCATCAGTTACTGTGGAAGTTGAATTTGAGCCATCAGTTAATATGAATATGGAGCCATCACCAGAAGTGAACATGCAGCCATCACCTAACATGAAAATGGAGCCATCACCAAAGCCAACTAAAACTATCTTTACAAGACTTGCAAAGAGAATTGGAAAATGTTCATGCTTGAACCAGAATTGA 3210 0.391 MSSSSSTHQWIYDVFINFRGEDTRHGFVSHLYAALSNAGIKTFLDNKSLEKGQGMKPELLRAIEGSRISLVVLSSNYASSRWCLDELVKIMECRATYGQLVFPIFYHVVPTDVRHQKGAFDLEAIKRTSRSNLRRWGAALLEVSGFSGYELSVDRSEAEAINEIVKNVFRKLDARLMSLTEFPVGLLSRLQEVIKLIESKSSKVCMVGIWGMGGLGKTTTAKAIYNQIHCEFMCTSFIENIREVCENGSRGHMHLQEQLISDVLETKEKIYSIGRGTAMIKKILSGKRALVILDDVTTSEQLKALCGNRDWFGSGSAIIITTRDMRLLNSLKADYVYAMKEMDEYESLELFSWHAFGEASPRKNFIELSKNVVAYCGGLPLALEVLGSYLNERKEKEWRSVLSKLERIPNDQVQEKLRISYDGLRDELEKDIFLDICCFFIGKDRANVTEILNGCGLYADIGITLLIERSLLQVERNNKLGMHDLVRDMGREIVRESSTKDPGKRSRLWFHEDVHDVLTKNTGTETVEGLVLKLQNTSRVCFSASTFKKMRKLRLLQLECVDLTGDYRHLSRELRWVYWKGFTSTFIPNHFYQGKLVVLELKYSSIKHLKVGEILLEKLKILNLSHTKYLVNTPDFSKLPNLEKLILKDCPSLIELHHSIGDLNNLLLINLEGCTSLNNLPGKTYQLKSVKTLILSGCSKIDKLEESIVQMESLTTLIAKDTAIKEVPHSILRLESIAYISLCGYEGLTRDVFPSLIRSWISPTMNPLYRIPLFAGKSLSLVSMDIQNYSSSILSSWLSSLSKLRSVWIQCHSEIQLTQKSRRILDDQYDKNSLDLEASSSYASQISDFSLKSLLIRLGSCHTVIDTLANSISQGLTTNDSSNFFLPGGNYPSWLAYKGEGPSVHFQVPEDRDCCLKGIVLCAVYSSTPENIATECLTSVMINNRTKFTIQIYKQDTVMSFNDEDWESVKSNLDPGDSIEIVVSFGRGLTVKGTAVYLIYAQSINMEIQPSVTVEVEFEPSVNMNMEPSPEVNMQPSPNMKMEPSPKPTKTIFTRLAKRIGKCSCLNQN* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4373 1069 MobiDBLite consensus disorder prediction 1026 1040 - -
Lja3g4373 1069 SMART till_3 11 146 IPR000157 GO:0007165
Lja3g4373 1069 MobiDBLite consensus disorder prediction 1025 1046 - -
Lja3g4373 1069 Gene3D - 5 176 IPR035897 -
Lja3g4373 1069 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 1000 IPR044974 GO:0006952
Lja3g4373 1069 Gene3D Ribonuclease Inhibitor 521 857 IPR032675 -
Lja3g4373 1069 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 146 IPR035897 -
Lja3g4373 1069 Gene3D - 341 425 IPR042197 -
Lja3g4373 1069 SUPERFAMILY L domain-like 482 810 - -
Lja3g4373 1069 Pfam NB-ARC domain 195 420 IPR002182 GO:0043531
Lja3g4373 1069 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 1000 - -
Lja3g4373 1069 Gene3D - 177 337 IPR027417 -
Lja3g4373 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 436 IPR027417 -
Lja3g4373 1069 PRINTS Disease resistance protein signature 685 701 - -
Lja3g4373 1069 PRINTS Disease resistance protein signature 206 221 - -
Lja3g4373 1069 PRINTS Disease resistance protein signature 283 297 - -
Lja3g4373 1069 PRINTS Disease resistance protein signature 376 390 - -
Lja3g4373 1069 ProSiteProfiles TIR domain profile. 10 172 IPR000157 GO:0007165
Lja3g4373 1069 Pfam TIR domain 12 177 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4373 Lja-Chr3 85008062 85018324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4373 12 734 WRKY Transcription Factor Family AT4G12020 31.806 4.00e-90 316