Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4372 ATGGCTTTTTCATCCTCGAATAATCATCATCAATGGATCTACGATGTGTTCATAAACTTCAGGGGAGAAGACACCCGTGGTAATTTCGTTTCTCATCTGTATGCCGCCCTCTCAAACGCGGGAATCAACGCTTTCTTTGATGATAAGAGTCTTGAAAAGGGATATGAGCTGAAACCAAAACTGTTGCGAGCAATTGAAAGGAGTGAAGCTGAAGAAATTCATGAAATTGTTAAAGACGTTTTCCGGAAACTAGATGGAACAGAAACTGTTGAGGGATTGGTTTTGAAGATGCAAAGATCAGACAGAGGTTGCTTCAATGCTAATGCTTTCAAGGAGATGAAGAAGCTGAGACTTTTGCAACTTGATAATGTTGAACTCGCAGGCGATTATGGGCATCTTTCCAAAGAATTGACATGGGTCTGGTGGAGAGGATGTGTTTTCAAACATATACCAAGTGACTTTTATCAGGGTAATTTAGTTGTTATGGACCTGAGACACAGCAATATTGTACAAGTTTGGAAGGAAGACAAGTTTCTGGAGAAGCTGAAAATTCTTAATCTCAGTCATTCTAGGTACTTGAAAAAAACCCCTGACTTTTCAAGGCTCCCAAATATAGAAAAGCTCATCATGAAGGATTGTCCAAGTTTGAGAGAGATGCACCAGTCCATTGGAGAGCTTAGTAATATTGTTCTAATAAATTTGAAGGATTGTACAAGCCTAAGCAATCTCCCAAGGAAAATCTATAAGTTGAAATCTTTGAAAACACTCATCCTTTCGGGTTGTTCAAAGATTGACAAACTGGAAGAAGATATAGTGCAAATGGAATCCTTGACAGCATTGGTTGCCAAAGACACAGCAATAGTAGAAGTTCCATATTCAATAATAAGATCAAAAAGCATTGCATACATATCCCTATTTTCGATGAATATGCAAAATTATAATTCTGGTGATATATCACCATTGCTTCCCAGCCTTTCAAATCCTAGATGTGTTACGATACAATGCGGCTCGGGGATTCAACTAACACAAGAATTAAGAAGATTTCTTGATGATCAATATGATGTAAGTTTTGCTGAAACAACAACAACATCACATACATCGCAAATCTCAAATTTCACCATGAGATCATTTTTGATTGGAATGGGAAGTTGCCACTTAGTCACCGATTCTCTTGGTCAAAGGATAGCACAGGGATTGGCATCCAGTGATTCTTACAACATTTTCCTTCCGGGTGACAATTATCCTTCTTGGGAAGCCTTTACAGGTGAAGGAACTTCAGTACATTTTGGTGTGCCTGACCATGATAGTGATTGTAGCATGAAGGGAATACTTTTATGTGTTGTTTATTCATCAACACTTGAAAACATTGCGACTGAAAGTCTTATTAGTGTCTTGATTATTAATTACACAAAATTTACCATCCAGATATTCAAGCGAGACACAGTAATGTCCTTTAATGATGAAGATTGGCAGGGTGTAATATCAAATCTAGGTTCTGGTGACGATGTGGAAATTTTTGTCGCTTTTGGCCATGGATTGATTGTTAAAGTGACCGCTGTCTATCTAATATATGGTGAGTCAAATGCTATAGAAATTGTGCCATCAATTAAGGTGAAAATAGAGCCATCACCTCAAGTGAACGTGGTATCATTACATAATGTGGAACTGGGGCCTTTACCTGAAGTGAATATGCAGCCATTGCTTGAAGTGGAAGTGGAGCTTTCACCTGAAGTGATTGTGCAACAATCAGCTAAGGTGGAAATGGAGCATTCACCTGAACCATTGCCTGAAGTGGAAATGCAGCCTTCACCTGAAGTGAATGTGCACCCATCATCTGATGTGGAAATAAAGCCTTCACCTGTAGTAAATTTGCAGCCATCAGCTGATGTGGAAATGGAGTCATCACCAAAGCCAAATATCTTTACAAGACTTGCAAGGAGAATGGGAGAATGTTCATGCTTGAGCCAGAAAAGAGTGTGGTGTACCCATACTTCATTCAATAACGGATTGCTCCGTGTAAAAGATGAGGAAGAGAAAATCATCAAGATGTTTTCCAAGAGTGAAGCTGAAGCAATTAATGCAATTGTTAATCAAGTTTTCCAGAATTTCCCATCAGCTAATGTGGAAATGAAGCCTTCACCTGAAGTAAATTTGCAGCCAACAACTAATGAGGAAATGGAGTCATCACCAAAGGCAACGTAA 2202 0.3887 MAFSSSNNHHQWIYDVFINFRGEDTRGNFVSHLYAALSNAGINAFFDDKSLEKGYELKPKLLRAIERSEAEEIHEIVKDVFRKLDGTETVEGLVLKMQRSDRGCFNANAFKEMKKLRLLQLDNVELAGDYGHLSKELTWVWWRGCVFKHIPSDFYQGNLVVMDLRHSNIVQVWKEDKFLEKLKILNLSHSRYLKKTPDFSRLPNIEKLIMKDCPSLREMHQSIGELSNIVLINLKDCTSLSNLPRKIYKLKSLKTLILSGCSKIDKLEEDIVQMESLTALVAKDTAIVEVPYSIIRSKSIAYISLFSMNMQNYNSGDISPLLPSLSNPRCVTIQCGSGIQLTQELRRFLDDQYDVSFAETTTTSHTSQISNFTMRSFLIGMGSCHLVTDSLGQRIAQGLASSDSYNIFLPGDNYPSWEAFTGEGTSVHFGVPDHDSDCSMKGILLCVVYSSTLENIATESLISVLIINYTKFTIQIFKRDTVMSFNDEDWQGVISNLGSGDDVEIFVAFGHGLIVKVTAVYLIYGESNAIEIVPSIKVKIEPSPQVNVVSLHNVELGPLPEVNMQPLLEVEVELSPEVIVQQSAKVEMEHSPEPLPEVEMQPSPEVNVHPSSDVEIKPSPVVNLQPSADVEMESSPKPNIFTRLARRMGECSCLSQKRVWCTHTSFNNGLLRVKDEEEKIIKMFSKSEAEAINAIVNQVFQNFPSANVEMKPSPEVNLQPTTNEEMESSPKAT* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4372 733 SUPERFAMILY L domain-like 95 326 - -
Lja3g4372 733 ProSiteProfiles TIR domain profile. 12 168 IPR000157 GO:0007165
Lja3g4372 733 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 68 IPR035897 -
Lja3g4372 733 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 69 - -
Lja3g4372 733 MobiDBLite consensus disorder prediction 709 733 - -
Lja3g4372 733 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 69 IPR044974 GO:0006952
Lja3g4372 733 Gene3D Ribonuclease Inhibitor 73 362 IPR032675 -
Lja3g4372 733 Gene3D - 6 71 IPR035897 -
Lja3g4372 733 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 74 524 - -
Lja3g4372 733 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74 524 IPR044974 GO:0006952
Lja3g4372 733 SMART till_3 13 123 IPR000157 GO:0007165
Lja3g4372 733 MobiDBLite consensus disorder prediction 593 613 - -
Lja3g4372 733 Pfam TIR domain 14 69 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4372 Lja-Chr3 84994297 85006840 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4372 75 294 WRKY Transcription Factor Family AT4G12020 33.051 8.19e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4372 - - lja:Lj3g3v0744690.1 622.468