Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4370 ATGGCGTCTTCTTCATCCTCCTCCAATCCCCAATGGGCCTACGACGTGTTCCTCAACTTCAGAGGCTCCGACACTCGCACCAGCTTCGTCTCTCATCTCTACGCCGCACTCTCAAACGCCGGCATCAACACTTTCCTCGACCAAGAGCTTGCCAAGGGAACGGAGCTGCAACCTGAAATCCTGCGAGCAATCGAAACCTCTCACATGTCAGTGGTTGTTTTCTCCAAAAGCTACACTGAATCATGCTGGTGCCTTAACGAGCTCGAAACCATCATGGAATGTCACAGGGTTCATGGGCAGGTGGTTGTTCCTGTGTTTTACGACGTTGAACCCTCGGTTGTGCGTCATCAGAAGGGTGCTTTTGGAGAAGCTTTGGAAACACTCGTGCGGAAAAGGTGTTCAGGGTCAGGGTTGAAATATGTGCGGTCTTCTTGGAAGACTGCACTCACTGAAGCTGCAAATTTAACTGGCTGGGATGTCACCAAGTACAGGAATGAAGGTGAACTAGTAAAGAGAATTGTTGAGGACGTTTGGACAAAACTAGACTACACATTCTTGTCTATTACTGAATTCCCAGTTGGATTGGAATCCCGTGTGCAAGAAGTTACTAGGCTGGTTGAGAACCAAACAAGCATAGTTCGTATGGTAGGGATCTGGGGGATGGGAGGGTCAGGTAAGACAACCACAGCCAAATCCATCTTCAATCAAATCCATCGCAACTTCATGTGTAGAAGTTTCATTGAAAACATTAGAGAAGTTTGTGAAAGCGACAGTACCAGAGGACTTATTCATTTACAAGAACAACTTCTCTCTGATGTCCTGAAAACAAAGGAGAAGATGCATAGCATTTCCATGGGGACAGCTATTATCGAGAAAAGACTCAAGTCGAAAAGGGCTCTAATCATACTAGATGATGTTACCACATCTAAGCAGTTGAAAGCCTTGTGTGGAAATCGAGAATGGTTTGGATCGGGAAGTGTAATAGTTGTTACAACTAGAGATGTACGGTTACTTAATTCGCTTAAAGCTGACTATGTGTACAGAATGAAGGAAATGGATGAAGATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTGGAGAAGCAAGTCCAAGAGAAGACTTGATTGAACTCTCAAGAAACGTGGTTGCTTACTGTGGAGGGTTACCACTCGCTCTTGAAGTCCTTGGATCTTACTTGAATGAAAGGACAGAACAAGAATGGAGAAGTGTGCTATCAAAACTGGAGAGAATTCCCAATGATCAAGTGCAGGAGAAACTCAGAATAAGCTATGATGGTTTAAGGGATCATTTGGAAAAGGAAATTTTTCTTGATATATGTTGTTTCTTTATAGGTAAGGACAGAGCCTATGTGACAGAGATACTAAATGCATTTAAAGTTGACAAGAAAAACAAGCTTCGAATGCATAACTTGCTGCGAGACATGGGAAGAGAAATTGTCCGTGAAAGTTCAGAAAAAGAGCCTGGGAAACGTAGTCGATTGTGGTTTCATGAGGAGGTGCATGATGTTTTGACAAAAAATACTGGAACAGAAAAGGTTGAGGGATTGGTTTTGAAGTTGCAAACAACAGAAAGAGTTTGCTTCAGTACTGATGCTTTCAAGGAGATGAAGAAACTGAGACTTTTACAACTTGATCATGTTGACCTCTCAGGAGATCATGCATATCTTTCAAAAGAATTAAAATGGGTCTATTGGCAAGGATTTACCTTAAAATCTATACCTGATGACCTTTATCAAGGAAATCTAGTTGTTATTGACTTAAAATACAGCAATATAAAACAAGTTTGGAAGGAAACCAAGTTGCTGGAGAAGCTGAAAATTCTCAATCTCAGTCATTCTAGGTACTTGAAAAAAACCCCTGACTTTTCAAGGCTTCCGAATCTAGAAAAGCTCATTCTGAAGGATTGTCCAAGTTTGAGAGAGAATAATATTTTGAGCTACCTATCTCCTTTTATTAGCAGCCTTTCGGAACTTAGAAGTGTTTGTTTACAATATGACTCGGGGATTCAACTAACTCAAGAATTAAGAAGATTTCTTGATGATCAACATGATGTAAATGTCATTGAATTGGAAAGTACATCAATTGCATCAGCCTTAGATCTTTCCTTGAGATCGCTTTTCATTGTAATGGGAAGTTGCAACATGGTCATAGATACTCTTTGCATGAGCATATCACAGGAATTGACAACCAATGGGTTAGATGATTTTCCTCTGCTGGGCGACTCTTATCCACATTGGTTGACTTATACAGGTGAAGGAAATTCAGTGCTCTTCACAGTTCCTCAAGATATTCATTGTCACATGAAGGGAATGACTTTGTGTGTTGTTTATTCATCAACTCCTAGAAACACAGTAGTTGAATGTCTTATTAGTGTCTTGATTGTCAATTACACAAAGTGTAGCATCCAAATATACAAACGAAACACAACAGTGACCTTTAATGAGGAAGATTGGCAGGGAATACTATCTCATCTAGGATCGGGTGATAAAGTGGAGATTTTTGTAACTTCTGGTCATGAATGGGCTGCTAAGAAGATAGTTGTTTATCTGATATATGATGAATCAACTGACATGGAAATGGCTTCCGATATATGGCCCTACTCAACTCAAGTAAGATTGCATTCTTTGGAGAATGCATGTGGTCTTGGATCAAAAAATAGCATGGAAAAGGTTCCTTCTCTGCAGCTAAGGAAAGAGCCTAAGAAAAATTCCTTTTCTGGTGCTCTGGAGGGTGTTGTTAAGGCATCTCAGCTTGAGATCATTGAACTGAAGCATATTGTGGATGAATTAAGTGAATTGGCATCATCATCATCATATGCATCACAAATCTCAGATTTTTCCTTGAGATCACTTTTGATTAGATTGGGAAGTTGCCACACAGTCATTGATACTCTTGCCAACAACATATCACAGGGATTGACAACCAATGATTCTAGTGATTTTTCCCTTCCGTGTGGTAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTTAGTACATTTTCAAGTGCCTGAGGTTCATGATTGTTACTTGAAGGGAATAGTTTTATGTGCTGTTTACTCATTAACACCTGAAAATATGGCAACTGAATGTTTTACTAGTGTCATGATCAATAATTACACAAAATTGACCATTCAAATCTACAAGCAAGATACAGCAATGTCCTTTAATGATGAAGATTGGGAGAGTGTAATATCAAATCTAGATCCTGGTGACAATATGGAGATTAATGTTGCTTATGGGCGTGGATTGACTGTTAAGGAGACAGCTGCCTATCTAATATATGGTCAGTCAATTACTATGAAAATTGAGCCATCAATTACTATGCAACTTGAATTTGAGCCGTCAGTTAATGTGAAAATGGAGCCATCACCTGAAGTGAACTTTCTTCCGTCACCTGATGTGAAAATGGAGCCATTACCTGAAGTGAATGTTCTTCCGTCACCTGATGTGAAAATGGAGCCATCACCTTAA 3501 0.4007 MASSSSSSNPQWAYDVFLNFRGSDTRTSFVSHLYAALSNAGINTFLDQELAKGTELQPEILRAIETSHMSVVVFSKSYTESCWCLNELETIMECHRVHGQVVVPVFYDVEPSVVRHQKGAFGEALETLVRKRCSGSGLKYVRSSWKTALTEAANLTGWDVTKYRNEGELVKRIVEDVWTKLDYTFLSITEFPVGLESRVQEVTRLVENQTSIVRMVGIWGMGGSGKTTTAKSIFNQIHRNFMCRSFIENIREVCESDSTRGLIHLQEQLLSDVLKTKEKMHSISMGTAIIEKRLKSKRALIILDDVTTSKQLKALCGNREWFGSGSVIVVTTRDVRLLNSLKADYVYRMKEMDEDESLELFSWHAFGEASPREDLIELSRNVVAYCGGLPLALEVLGSYLNERTEQEWRSVLSKLERIPNDQVQEKLRISYDGLRDHLEKEIFLDICCFFIGKDRAYVTEILNAFKVDKKNKLRMHNLLRDMGREIVRESSEKEPGKRSRLWFHEEVHDVLTKNTGTEKVEGLVLKLQTTERVCFSTDAFKEMKKLRLLQLDHVDLSGDHAYLSKELKWVYWQGFTLKSIPDDLYQGNLVVIDLKYSNIKQVWKETKLLEKLKILNLSHSRYLKKTPDFSRLPNLEKLILKDCPSLRENNILSYLSPFISSLSELRSVCLQYDSGIQLTQELRRFLDDQHDVNVIELESTSIASALDLSLRSLFIVMGSCNMVIDTLCMSISQELTTNGLDDFPLLGDSYPHWLTYTGEGNSVLFTVPQDIHCHMKGMTLCVVYSSTPRNTVVECLISVLIVNYTKCSIQIYKRNTTVTFNEEDWQGILSHLGSGDKVEIFVTSGHEWAAKKIVVYLIYDESTDMEMASDIWPYSTQVRLHSLENACGLGSKNSMEKVPSLQLRKEPKKNSFSGALEGVVKASQLEIIELKHIVDELSELASSSSYASQISDFSLRSLLIRLGSCHTVIDTLANNISQGLTTNDSSDFSLPCGNYPSWLAYKGEGPLVHFQVPEVHDCYLKGIVLCAVYSLTPENMATECFTSVMINNYTKLTIQIYKQDTAMSFNDEDWESVISNLDPGDNMEINVAYGRGLTVKETAAYLIYGQSITMKIEPSITMQLEFEPSVNVKMEPSPEVNFLPSPDVKMEPLPEVNVLPSPDVKMEPSP* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4370 1166 ProSiteProfiles TIR domain profile. 12 181 IPR000157 GO:0007165
Lja3g4370 1166 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 158 IPR035897 -
Lja3g4370 1166 Gene3D - 188 346 IPR027417 -
Lja3g4370 1166 Pfam TIR domain 13 187 IPR000157 GO:0007165
Lja3g4370 1166 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 668 853 - -
Lja3g4370 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 446 IPR027417 -
Lja3g4370 1166 MobiDBLite consensus disorder prediction 1139 1166 - -
Lja3g4370 1166 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 648 - -
Lja3g4370 1166 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 668 853 IPR044974 GO:0006952
Lja3g4370 1166 Gene3D - 8 187 IPR035897 -
Lja3g4370 1166 Gene3D Ribonuclease Inhibitor 470 696 IPR032675 -
Lja3g4370 1166 Pfam NB-ARC domain 203 432 IPR002182 GO:0043531
Lja3g4370 1166 PRINTS Disease resistance protein signature 386 400 - -
Lja3g4370 1166 PRINTS Disease resistance protein signature 215 230 - -
Lja3g4370 1166 PRINTS Disease resistance protein signature 293 307 - -
Lja3g4370 1166 PRINTS Disease resistance protein signature 607 623 - -
Lja3g4370 1166 SMART till_3 13 155 IPR000157 GO:0007165
Lja3g4370 1166 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 648 IPR044974 GO:0006952
Lja3g4370 1166 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 930 1103 IPR044974 GO:0006952
Lja3g4370 1166 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 930 1103 - -
Lja3g4370 1166 SUPERFAMILY L domain-like 474 711 - -
Lja3g4370 1166 Gene3D - 351 435 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4370 Lja-Chr3 84976769 84990734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4370 193 702 WRKY Transcription Factor Family AT5G45050 30.199 1.92e-62 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4370 - - mtr:MTR_8g037220 969.918