LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4353	ATGGGTTGCATACTTTGTAAGTCTTCTGCCATTGAGGATAGCAAGGATAGCCCAAGGGAACCTTTATCAAACAAGGCTGTGCTGGACTCACGCGTGTCTAGGGGAACTTCATCAAAGAGGGAGGAAGGGTATCGGGTAAAGGATCGATATGGTAGCAATAATGGGAGAGTTGCGTTGATTGATAAGCAAGGGCGAGGAAATGGCTCTCTTCGAGTGCAAGGCGGTCAATTTGAAAGGAATAGGGAGAAAATGGAATATGCTGTTGTTCGAAATCCAGGGATTGGTAGTGTTCCCAAAGCCTTGGAAGGGGAGCAGGTTGCAGCTGGGTGGCCCTCATGGCTAGCAGCAGTGGCGGGAGAGGCTATCAAGGGATGGGTGCCACGGCGTGCCGAATCGTTTGAGAGATTGGATAAAATTGGTCAAGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAACAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTCAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGCCCTGGTTACTTCAAGGATGTCATGCAGCTTATACCTTGTTTTTGAATACATGGAGCATGATTTGGCTGGGCTCGCATCACATACTGGGATGAAGTTTACAGAAGCACAGGTGAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCATAGCTGTGGTGTACTGCATCGTGACATTAAGGGTCCCAATCTTTTGATTGACAACAATGGTATCTTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTCGATCCCAATCAAATTCAGCCACTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCGCCAGAGCTTTTACTTGGAGCTACTTACTATGGCACTGCTGTCGATTTATGGAGTACAGGTTGCATACTTGCAGAGATGTATGCTGGAAAACCTATAATGCCTGGTAGAACTGAGGTGGAGCAATTACATAAAATTTTCAAACTTTGTGGCTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAACCCTATAGGCGCTGTGTTGCTGAAATATTCAAGGAGCTTCCTGCACCTGCAATAAAACTGATAGAGACCCTTTTGTCCGTAGATCCTTCTGATCGTGGAACTTCAGCATCTGCTTTGAAGAGTGAGTTCTTCTCAACGAAGCCTCTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGAAGCTAGAAGACAAGTAGCAGAAGGATGCGAGGCTCAGAGACATGATCCTGAGAGAAGAGGAGCAAGAGAATCTCGAGCCATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCAATGCAGAGACAAGGGAAAACTTATTCACAAAGCAGGAGTGAGAAGTTCAACCCTCATCCTGAAGAAGTTGCATCTGGATTTCCCATTGACCCCCCTAGACCATCACAAGCTGTGGAAGTAAGTCGGGATTCCCAGGTGCATCAACATAAAAGGGCCTCCCATTCAGGTCCGCTGAATCACCGCAATGTTGCTCCAAAGATTTCAATGGGGGGTGACTTACCAACAAGCTCAGGCTTAGTTGCATCCAGGAGGAGTATGTTGTCTGACAATCGCGGAGAAACGTCTGGATTGTCACAAGCAGAGGCTCCTAAACTAATAACCTGGTTCCCAGGATCCTTCAAGGACGCCTCTGAACCATTGACGCGACAGGATCAGAAGCATCATGGACATGCTCCTCAGAAGGAAGAAGGGAGATGCAGTAACCAAGACCCAAATCTTGTTGGTTATGGGTCCAAGGGTTATAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCTAGCAACACGGATCAGATGTTGAAAGACCATGACCGCCAAATTCAGGAGGCGGGTAGAAGAGCTCGACTGGAGAAGGCAAGAATGAGAAGACTTCAAGCTCAGGGGAACGACATAACCAATATTTTATTTGTTTCTGGTCGTTGA	2097	0.4559	MGCILCKSSAIEDSKDSPREPLSNKAVLDSRVSRGTSSKREEGYRVKDRYGSNNGRVALIDKQGRGNGSLRVQGGQFERNREKMEYAVVRNPGIGSVPKALEGEQVAAGWPSWLAAVAGEAIKGWVPRRAESFERLDKIGQGTYSNVYRARDLEQNKIVALKKVRFDNLQPESVRFMAREIHILRRLDHPNVIKLEALVTSRMSCSLYLVFEYMEHDLAGLASHTGMKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGPNLLIDNNGILKIADFGLASFFDPNQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAEMYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAEIFKELPAPAIKLIETLLSVDPSDRGTSASALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQVAEGCEAQRHDPERRGARESRAIPAPDANAELVLSMQRQGKTYSQSRSEKFNPHPEEVASGFPIDPPRPSQAVEVSRDSQVHQHKRASHSGPLNHRNVAPKISMGGDLPTSSGLVASRRSMLSDNRGETSGLSQAEAPKLITWFPGSFKDASEPLTRQDQKHHGHAPQKEEGRCSNQDPNLVGYGSKGYKIHYSGPLLVPSSNTDQMLKDHDRQIQEAGRRARLEKARMRRLQAQGNDITNILFVSGR*	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4353	698	PANTHER	CYCLIN-DEPENDENT KINASE	1	680	-	-
	Lja3g4353	698	Coils	Coil	665	685	-	-
	Lja3g4353	698	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Lja3g4353	698	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Lja3g4353	698	MobiDBLite	consensus disorder prediction	604	622	-	-
	Lja3g4353	698	CDD	STKc_CDK9_like	133	417	-	-
	Lja3g4353	698	MobiDBLite	consensus disorder prediction	12	42	-	-
	Lja3g4353	698	SUPERFAMILY	Protein kinase-like (PK-like)	127	425	IPR011009	-
	Lja3g4353	698	MobiDBLite	consensus disorder prediction	598	630	-	-
	Lja3g4353	698	MobiDBLite	consensus disorder prediction	452	471	-	-
	Lja3g4353	698	Pfam	Protein kinase domain	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4353	698	ProSiteProfiles	Protein kinase domain profile.	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4353	698	MobiDBLite	consensus disorder prediction	485	499	-	-
	Lja3g4353	698	Gene3D	Phosphorylase Kinase; domain 1	120	215	-	-
	Lja3g4353	698	MobiDBLite	consensus disorder prediction	452	563	-	-
	Lja3g4353	698	Gene3D	Transferase(Phosphotransferase) domain 1	216	457	-	-
	Lja3g4353	698	SMART	serkin_6	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4353	698	PANTHER	CELL DIVISION PROTEIN KINASE	1	680	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4353	Lja-Chr3	83900080	83906970	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4353	125	459	Core Cell Cycle Gene Families	AT5G10270	50.000	2.94e-114	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lja3g4353		Pkinase	3.5e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g4353	-		-	gmx:100792173	1188.33