Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4352 ATGCAGCAGGGTGCACAAAACGACACCGTCGAGTCACCTGGGGGTGTCGTTTTATTCGGGAAATACCAGCTTCTCAACCTTCTCGGCGTAGGCGCGTCCGCGAAGGTGTACCACGCGCGTGACGTCACAACGAAGCAGAGCGTGGCGGTGAAAGTTGTAAACAAGCGCAACCAAAACGGTTACACGGCGCACATAGAGCGCGAAGTCTCTATCATGCGCCGGCTGCGCCACCCGCACACCGTCAAACTCTACGAGATCCTCGCCACGAAAACCAAGGTCTACTTCATCATGGAGTTCGTCGCTGGCGGGGAGCTCTTTGCCTTAGTCGACGCAGCCGGACGTCTCACGGAGGATCTCAGCCGGAGATACTTCCGGCAGCTCGTCTCCGCCGTGAGGTACTGCCACTCCCGCGGCGTCTTCCACCGCGATCTCAAGCTCGACAATCTCCTCATCGACGAGAACATGGACCTCAAGGTCTCTGACTTCGGGCTCAGCGCGACCGGAAACCCGACCAGGCCGGACATCATGCTCCACACCGTTTGCGGCACTCCGGCTTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGATACGGCGGCGCCGGTGCCGATGTGTGGTCATCCGGCGTCGTTCTGTTCGTGCTCGCCGCCGGGTATTTGCCATTCAACGACTATAATATCACGATTCTGTACAGGAAAATCTACCGTGGCCATTTTCGGTTTCCAAAATGGATATCGAGTGATCTGAAGAATCTTCTATCGAGGTTGTTGGACACGAATCCCGAGACGAGGATCACTCTAGATGAAGTCATGGTGGACCCGTGGTTCATCCATGGTGGATATAGTGACCCGTTTGTGCGACCCTATGAGGTTGAAAGTGAGAACCGGGTCGGGTCAAAGACGGTTTTGAACGCGTTCGATTTGATATCGTTTTCATCCGGGTTTGACATGTCGGGTTTGGTATCCGACCCGGAGTATTCGGATCACACCGAGCGGTTCATCATTGCCCGAGAGATGTCGGAGAGGGTGATTAAGGAGGTGGAAGAGGCGGCGGAGAGGAAGAGAGTGACGGTGAGAAGGACGGAGGAGAATGGTGGCTGTGGAGGGGAGAAGATAGAGGGGTTAGATGGTAATTTTGTGATTTGGGTCGGGTTTTACCAGTTAATAACGGATGGGTTGGTTGTGGTTGAGGTAATGAGAAGAGAGACTAGAGTAGGAAGTAGTGCACTTTTCTGGAAAGATGTATTGAGACCCAAGCTTGTTTGCCTTAGCTCATAA 1275 0.542 MQQGAQNDTVESPGGVVLFGKYQLLNLLGVGASAKVYHARDVTTKQSVAVKVVNKRNQNGYTAHIEREVSIMRRLRHPHTVKLYEILATKTKVYFIMEFVAGGELFALVDAAGRLTEDLSRRYFRQLVSAVRYCHSRGVFHRDLKLDNLLIDENMDLKVSDFGLSATGNPTRPDIMLHTVCGTPAYVAPEILAKKGYGGAGADVWSSGVVLFVLAAGYLPFNDYNITILYRKIYRGHFRFPKWISSDLKNLLSRLLDTNPETRITLDEVMVDPWFIHGGYSDPFVRPYEVESENRVGSKTVLNAFDLISFSSGFDMSGLVSDPEYSDHTERFIIAREMSERVIKEVEEAAERKRVTVRRTEENGGCGGEKIEGLDGNFVIWVGFYQLITDGLVVVEVMRRETRVGSSALFWKDVLRPKLVCLSS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4352 424 Gene3D Transferase(Phosphotransferase) domain 1 102 278 - -
Lja3g4352 424 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Lja3g4352 424 SMART serkin_6 22 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4352 424 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Lja3g4352 424 Coils Coil 343 363 - -
Lja3g4352 424 Gene3D Kinase associated domain 1, KA1 298 422 - -
Lja3g4352 424 SUPERFAMILY Protein kinase-like (PK-like) 18 314 IPR011009 -
Lja3g4352 424 Pfam Protein kinase domain 22 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4352 424 ProSiteProfiles Protein kinase domain profile. 22 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4352 424 Pfam NAF domain 301 358 IPR004041 GO:0007165
Lja3g4352 424 CDD CIPK_C 303 419 - -
Lja3g4352 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Lja3g4352 424 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 6 421 - -
Lja3g4352 424 Gene3D Phosphorylase Kinase; domain 1 11 101 - -
Lja3g4352 424 PANTHER - 6 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4352 Lja-Chr3 83889108 83890382 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4352 17 420 CBL-interacting serine-threonine protein kinases AT2G30360 54.258 6.91e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja3g4352 Pkinase 7.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4352 - K12761 gmx:100788245 460.685