Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4350 ATGGAACAGAAAGGAAGTGTGCTTATGCAACGTTATGAGCTAGGGAGATTATTAGGCCAAGGAACTTTTGCAAAGGTCTACCATGCAAGGAACCTCATAAATGGCATGAGTGTGGCCATCAAAATTATTGATAAAGAGAAGGTTTTCAGGGTAGGGATGATTGATCAGATTAAACGCGAAATTTCAGTGATGAGACTAATCAAGCATCCTCATGTGGTGGAGCTTTATGAGGTAATGGCAAACAAATCCAAAATTTTCTTTGTCATAGAGTATGTCAAAGGGGGTGAGCTTTTTGGCAAGATATCCAAAGGAAGGCTCAAGCTGGATGATGCTAGGAGATACTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCATAGCAGAGGTGTGTGTCACCGCGATCTAAAACCGGAAAATCTTCTATTGGATGAAAATGGAAATTTGAAGGTATCAGATTTCGGGTTAAGTGCTCTTGCTGAGTCTAAGCATCAAGATGGATTACTCCATACTACATGCGGTACTCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGATATGATGGAACCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTTTTATTGGCTGGTTATCTTCCATTTAGAGATTCAAACCTGATGGAGATGTACCGGAAGATCGGTAAGGCGGAATTCAAATTTCCTAACTGGTTTGCGCCTGATGTACGAAGATTGTTGTCCAAAATCTTGGATCCAAACCCAAGGACCAGGATATCATTGGCGAAAATCATGGAAAGTTCGTGGTTCAGAAAGGGGCTTCAGAAACCTGCTATTACTGAAAGCGGAGACAGAGAAATAGCTCCTCTTGATACTGATGGATTATTTGGAGCTTGTGAGAATGGAGGTCCTGTTGAACTATCAAAACCTTGTAATTTAAATGCTTTTGATATCATCTCCTATTCAACAGGTTTTGACTTGTCTGGATTGTTTGAGGAGACTGGTCGAAAGAAAGAAGAGCGTTTCACATCGAACAAGCCCGCCTCCATTATCATCTCCAAATTAGAAGAAATTTGCAAGCGTCTCGGGCTAAAAGTGAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTGCAAGGAAGGTAGGAAAGGGCCTTTGGGTATTGATGCAGAGATTTTTGAGATCACACCAGTCTTCCATCTAGTGGAGTTAAAGAAGTCTAGTGGAGATACATTGGAGTACCAGAAGCTTTTGAAACAAGACGTTAGGCCTGCGCTTAAGGACATTGTTTGGAACTGGCAAGGAGAACAACCTCAACCACAGCCATTGCAACCTGAAATAGTGCAGAAAGAGGAACAGCCGTGTCATTCGGACATATCAGACGTTGTACCACAACCAATTCCTCAATGA 1401 0.4197 MEQKGSVLMQRYELGRLLGQGTFAKVYHARNLINGMSVAIKIIDKEKVFRVGMIDQIKREISVMRLIKHPHVVELYEVMANKSKIFFVIEYVKGGELFGKISKGRLKLDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGTKADIWSCGVILYVLLAGYLPFRDSNLMEMYRKIGKAEFKFPNWFAPDVRRLLSKILDPNPRTRISLAKIMESSWFRKGLQKPAITESGDREIAPLDTDGLFGACENGGPVELSKPCNLNAFDIISYSTGFDLSGLFEETGRKKEERFTSNKPASIIISKLEEICKRLGLKVKKKDGGLFKLEGCKEGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQKLLKQDVRPALKDIVWNWQGEQPQPQPLQPEIVQKEEQPCHSDISDVVPQPIPQ* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4350 466 Gene3D Kinase associated domain 1, KA1 304 429 - -
Lja3g4350 466 PANTHER - 2 443 - -
Lja3g4350 466 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Lja3g4350 466 CDD CIPK_C 310 424 - -
Lja3g4350 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4350 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4350 466 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4350 466 Gene3D Transferase(Phosphotransferase) domain 1 3 291 - -
Lja3g4350 466 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 443 - -
Lja3g4350 466 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Lja3g4350 466 MobiDBLite consensus disorder prediction 447 466 - -
Lja3g4350 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja3g4350 466 Pfam NAF domain 306 364 IPR004041 GO:0007165
Lja3g4350 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lja3g4350 466 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4350 Lja-Chr3 83871713 83873113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4350 1 436 CBL-interacting serine-threonine protein kinases AT5G58380 67.033 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja3g4350 Pkinase 8.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4350 K07198 - gmx:100815651 810.061