LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4345	ATGGGAATTCAGAAATATATGGTTGCCATCAGGTTTAGCTTTTGTGTTCTTTTGGTTCTTCTTCTTGTAGCAGCAGTTAGCTTTGTAGAAAAGAAGGAATCACAAGATGAGTTTGTTAGTGAACTACTTGATTCAACATCCGGATTGTTAGATGAGCACAAGGTACTGTGGATCAGTTGCTGGGAAGATTTAATTCATTTAAAGAAAGAGTTTCAAGATCATGACTTATGCCTCCCACAGGAATTGTTTGGGAGCACCAATAGAGTCAGTTCAGAGATTAGTCTATTTGCACGAGCGGACATCCAAAATTTGATTACGGCTTGCCATCCTCAGTTCAGGGAAAACTTTCTTCACTGTTTGAGAAAAAATAATCTTCCAATACGTGTCTCAATAGAAGAGGATGATTCCAATATATGGCATGTCACTTATATGGGATCACTTCTTTCAAAATTCAGTGTTCCCAGAAGGAACTCAGGCCGAGTTTTGCTCCAGCAAATATCAGAGCCACCTAGTCCAGGTCCTGCAATTGGATCACCTACACCCAATCTACCACCATCTCCTGAATCCGGTTTTGCACCCGCATCTCAACCCAGTCCAGCACCATCATCTGGACCCAGTTCAACACCATCACCTGCTTCAGCACCATCACCTAAACCTCTGGTTCCTCATTTGCCTCCATCCTCATTTTTCCCGAAATTGACGCCACCAGCAGCTGAAGATGTTTCTGCTCCTCCTTCTTCTGACTCTAACAAGCAGGAAGATAAGCATAATAATAGAAAGACAGTGGTTCTTGCTGTAGTTATAACTGCATTGGTGACATTTATAGCTGCAGCGCTGTTCTTTTTATTCTGTAGTCGGTATTGTAAGACTAGACGAGTTAGACAAAATGACGAGAGGCCCCTTCTCACCTTGAGCATGAGTGACTTTTCTGTTGGTCCTTCTTCCAATTATGATTTTGGAAATTCAATGAAAGGGGAGAAACTTGGGTTTCAGTCATCAAGTAATAATTTAGTTGACAACAAAAAGACCTCAGTGCAAGAAAGTCAACCAATAGGAGCGTATACTGCTGCCGGATCACCATTTGAAGTGAAACCTCCTCCGGGGAGAGTAGGAACCATCCCTTCTGGAATCCCTCCTTTAAAACCTCCTCCAGGCAGGTGGAATCCTCTTCCCCCTGAACCACCTTCATTTAGGGCTTCAAATAACGCTGCTATCCCTGCTTCTGCTGCTCGTCCTCCTCGACATCCTACTCTTGGCAGCGCTCCAACTCCTGGTCCTCCTCCTCCACCACCCCCAGCACCAGCTGGTGCAAAATCTGGTCTAACTCCACCACCAGCAGTATCACTAGCTGTTGGCAAACCTGGTCCTCCTCCTCCACCACCCCCAGCACCAGCTGGTGCAAAACCCGGTCTAACTCCACCACCGGCAGTAGCACTAGCTGGTGGCAAACCTGGTCCTCCACCACCCCCACCCCCAGCACCAACTGGTGCTAAACCTGGTCCACATCCACCACCTCCTCCTCCTAAGAGTGGTATCGCTCCTCCTCGGCCTCCTCCTCCTCGACCTCCTCCTCCAGCTAGTAGACCAAAAGCTACAGAGAGTTTTGAAGCTGATGCAGATGGTGAAGCTGATGTTCCTAAAGCCAAGCTAAAGCCTTTTTTCTGGGATAAGGTTCCAGCTAACTCCGATCATTCAATGGTCTGGAATCAGATCAAGTCTGGATCATTCCAGTTTAATGAAGAGATGATAGAAACACTTTTTGGATATAATGCTGTGGATAAAAACAATGGTCAACGACAGAAAGGGTCTTCTTCCCAAGACCCTTCACCTCAGTATATCCAGATCATCGACAAAAAGAAATCGCAAAATTTATTAATTCTGTTGCGAGCATTGAATGTGACAGTGGAAGAAGTTGGTGATGCACTTTATGAAGGAAATGAGCTACCCTCAGAAGTCCTTCAAACCTTGTTGAAGATGGCACCTACGTCAGATGAAGAACTTAAGCTTAGACTTTTTGGCGGTGAGCTGTCTCAACTTGGGCCTGCTGACCGTTTTCTGAAAGCCCTGGTTGACATTCCATTTGCTTTCAACCGAATGGAAGCTCTACTTTTCATGGGTACATTTAAAGAGGACCTCACTACTATTATGGGGTCTTTTGCAGTTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTGTTCCTCAAACTTCTTGAAGCTGTTCTCAAAACTGGTAACCGAATGAATGATGGAACATTCCGTGGCGGTGCACAAGCATTTAAACTTGATACACTCCTGAAATTATCTGATGTGAAGGGAACAGATGGCAAGACTACACTTTTACACTTTGTTGTTCAAGAGATTATCCGCTCTGAGGGCATAAAAGCTGCTCGAGCAGCGAAAGAGAGCCAGAGTTTGTCCAGTATTAAAATGGATGGAGAAGAAGATCACTACAGTGAAATCGGTCTTCAGGCGGTTTCACACTTGAGCAGTGAGCTTGAGAATGTAAAAAGAGCAGCAATTCTAGATAGGGAGAGCTTAACTTCAACAACTGGCATACTTTCCAATGGTCTTCTAAGAACCAGGGACTTAGTAAACAAAAACCTCGCGAATGTGAAGGAGGATAGAGGGTTTTACGAGAAAGTAGGAAGCTTTGTGAAGAATGCTGAGGTTGATGTTATGAACCTGATGGAAGAAGAGAAGAAAATCATGGCTCTTGTGAAGAGCACTGGTGATTACTTTCATGGGAATACCAGGAAGGATGAAGGCCTGCGATTGTTTGTAGTAGTACGGGACTTCTTAATAATGGTTGATAAGGTATGCAATGAGGTGAGAATTGCACAGAAGAAGCCAGCAAAAACTCTAAAACAAGAGGCTTCTCAAGGATCATCTTCATCCCAAACACGCCCACCGCCTTCTGATTTTCGTCAGCGGCTTTTTCCAGCGATAGCTGAAAGGAGGATGGATGACGACATGAGTTCAGATGATGAGAGTCCATAG	3003	0.4482	MGIQKYMVAIRFSFCVLLVLLLVAAVSFVEKKESQDEFVSELLDSTSGLLDEHKVLWISCWEDLIHLKKEFQDHDLCLPQELFGSTNRVSSEISLFARADIQNLITACHPQFRENFLHCLRKNNLPIRVSIEEDDSNIWHVTYMGSLLSKFSVPRRNSGRVLLQQISEPPSPGPAIGSPTPNLPPSPESGFAPASQPSPAPSSGPSSTPSPASAPSPKPLVPHLPPSSFFPKLTPPAAEDVSAPPSSDSNKQEDKHNNRKTVVLAVVITALVTFIAAALFFLFCSRYCKTRRVRQNDERPLLTLSMSDFSVGPSSNYDFGNSMKGEKLGFQSSSNNLVDNKKTSVQESQPIGAYTAAGSPFEVKPPPGRVGTIPSGIPPLKPPPGRWNPLPPEPPSFRASNNAAIPASAARPPRHPTLGSAPTPGPPPPPPPAPAGAKSGLTPPPAVSLAVGKPGPPPPPPPAPAGAKPGLTPPPAVALAGGKPGPPPPPPPAPTGAKPGPHPPPPPPKSGIAPPRPPPPRPPPPASRPKATESFEADADGEADVPKAKLKPFFWDKVPANSDHSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKGSSSQDPSPQYIQIIDKKKSQNLLILLRALNVTVEEVGDALYEGNELPSEVLQTLLKMAPTSDEELKLRLFGGELSQLGPADRFLKALVDIPFAFNRMEALLFMGTFKEDLTTIMGSFAVLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESQSLSSIKMDGEEDHYSEIGLQAVSHLSSELENVKRAAILDRESLTSTTGILSNGLLRTRDLVNKNLANVKEDRGFYEKVGSFVKNAEVDVMNLMEEEKKIMALVKSTGDYFHGNTRKDEGLRLFVVVRDFLIMVDKVCNEVRIAQKKPAKTLKQEASQGSSSSQTRPPPSDFRQRLFPAIAERRMDDDMSSDDESP*	1001

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	172	232	-	-
	Lja3g4345	1000	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	540	964	IPR015425	-
	Lja3g4345	1000	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	610	962	-	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	165	256	-	-
	Lja3g4345	1000	Pfam	Formin Homology 2 Domain	543	938	IPR015425	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	955	974	-	-
	Lja3g4345	1000	PANTHER	FORMIN-RELATED	1	998	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Lja3g4345	1000	PANTHER	FORMIN-LIKE PROTEIN	1	998	-	-
	Lja3g4345	1000	SMART	it6_source	540	953	IPR015425	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	479	529	-	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	371	396	-	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	356	544	-	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	952	1000	-	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	449	471	-	-
	Lja3g4345	1000	MobiDBLite	consensus disorder prediction	417	439	-	-
	Lja3g4345	1000	Gene3D	Formin, FH2 domain	545	971	IPR042201	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4345	Lja-Chr3	83701280	83707847	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4345	237	990	FH2 protein (formin) Gene Family	AT5G54650	50.064	0.0	603

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g4345	-		-	gmx:100793413	714.146