Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4344 ATGCCAACAGTGTGGTTCAATCTGAAGAGGTCTTTACATTGCAAATCAGAACCCTCTGAAGTTCATGACCCAAAATCAAGGAAGCAATTGAGCACAATCTTGACCAAAAAACCAGGAAGATCAGGGTGTTCAAGGTCCATAGCTAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCATCTTGAAGACAAGCCACCAACTTGCAGCCCAAGATCCATAGGAAGCAGTGAGTTTCTCAACCCAATAACTCATGAAGTGATTTTGAGTAACTCAAGGTGTGAGCTCAAAATCACTGGATATGGAGGATTCCAAGAAGGGGTTGTTGGCAATAACAACAATGCTGGTGGCGGCGGCGGTGGTGGTGGTTCAACTTTTGTTGGAACTTTGAGGCCTGGGACTCCTGGCCCTGGAGGGAACCCTACAATGCATTACTTTAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCAGTTCATCAGACAAAGAAGGGTCTGGTCTTCATTCAAGCAATAGGTTTCACCCTGAGACAACAACAGACTCTAATGGCTCTTCTTCTGTGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGAAGCTGCTGAAGCTCATCATCTGTCCAAACATGCAGTTACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACAAGTTGGTTAAAGTCTGAAAACAACTGCGGTCGAATCGAGAGAGTTTTGAAAGTCCACAACATGCAAAGGACTTTGGCTAGATTTGAAGAGTACAGGGAGATGGTGAAAACCAAAGCCAGCAAACTCCAGAAGAAGCATCCTAGGTGTTTGGCTGATGGAAATGAGCTTTTGAGGTTCTATGGAACCACTCTTGCATGCTCTCTTGGTCTCAATGGTTGTTCTAGTCTCTGCCTATCAGATAAATGCTGTGTTTGCAGAATTATCAGGAATGGCTTTTCTGCAAAGAAGGAGCTCAAGGGTGGGGTTGGTGTTTTTACAACCTCCACAAGTGGAAGAGCTTTTGAAACCATTGAGAGTTTTGGTAATGAACCACCATCATTGAGAAAAGCCCTTATTGTGTGCAGAGTGATTGCTGGCAGGGTTCATAGGCCACTTGAGAACATTCAGGAGATTGCATCCCAGACAGGGTTTGACTCATTGGCTGGGAAAGTGGGCCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGTAAACCATGA 1281 0.4411 MPTVWFNLKRSLHCKSEPSEVHDPKSRKQLSTILTKKPGRSGCSRSIANLKDVIHGSKRHLEDKPPTCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVVGNNNNAGGGGGGGGSTFVGTLRPGTPGPGGNPTMHYFNPSFRTSSTPPRKSPFSSSDKEGSGLHSSNRFHPETTTDSNGSSSVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENNCGRIERVLKVHNMQRTLARFEEYREMVKTKASKLQKKHPRCLADGNELLRFYGTTLACSLGLNGCSSLCLSDKCCVCRIIRNGFSAKKELKGGVGVFTTSTSGRAFETIESFGNEPPSLRKALIVCRVIAGRVHRPLENIQEIASQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4344 426 SUPERFAMILY ADP-ribosylation 216 425 - -
Lja3g4344 426 ProSitePatterns Zinc finger C2H2 type domain signature. 193 214 IPR013087 -
Lja3g4344 426 MobiDBLite consensus disorder prediction 119 191 - -
Lja3g4344 426 MobiDBLite consensus disorder prediction 144 191 - -
Lja3g4344 426 Gene3D - 216 425 - -
Lja3g4344 426 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 426 - -
Lja3g4344 426 PANTHER - 2 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4344 Lja-Chr3 83687198 83689846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4344 1 426 C2H2 Transcription Factor Family AT5G54630 65.948 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g4344 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4344 - - gmx:100787790 726.087