Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4342 ATGGACTCAAAGCAGTTTCTTAATTTCGATGTGACTAGCTCAGGAGGAATACCTCGTACATCATCTTATCCTACTGTTTCACCAATACCAAACCGGCTACTTGGATCCTTGAAAATCGACACAGGAAACTCGCCTATATCATCCCTTTCTACTCAATTTGATTCTGATACTCTTTCTGCATTAAGTGACAGCCAGGAAACCCTTTCCGGTGCCAGCCCTTCTTGTGATTCCTTGCAAGAAAGTAATCATCATTTCCATAGGAGCTTCCTTCCACAGAATGCATGTTGGGACCAGGAAACCAGACATAGGCTGTTGGAACTAGAAACTCGTTTGATGGAACATGATGGTGATGATGAAGTTACCACATCAAAGACTCCTTTTGGTGAAAGCAGTAGACCAACAACATCTGGCCAAAGAAATAGGCCCTGGAGCCAAGAGGGTCAGGGATCAGAATATACCCAAAGTGAAAGCAAGGGTCAGGGATCAGAATATACCCAAAGTGAAGTTAAACGAGTCGAGAAACGTCACAAGTCAATGGAGGTGGAAACATCAGCACAAGGCTTCCCAACAAGCAATTTGAAACAATTGCTGATTGTATCTGCCAAAGCCCTTTCAGAAAACAAAATGAAAGATTTTGATCATCTGATAGGAAAGGCCAGAAGTTGTGTATCCATAAGCGGGGAGCCGATACAGCGGCTTGGTGCTTATTTGGTTGAAGGGCTTGTTGCAAGGAAAGAAGCATCAGGGAATAACATCTACCATGCCCTCAGGTGCAGAGAGCCTGAGGGCAAAGACTTACTCTCTTACATGCAGTTACTCTATGATATGTGCCCATACTTAAAATTTGGTTACATGGCTGCAAATGGGGCTATTGCTGAAGCTTGCAGAAATGAGGACCAAATCCACATCATAGACTTTCAGATTTGTCAGGGAACTCAATGGACGACTCTCCTTCAAGCTCTTGGAGCCAGACCAGGCGGGGCACCGCACGTGCGGATCACGGGGATTGATGATCCTGTTTCGAGATATGCTCGAGGCGATGGACTAGAGGTGTTCACAATGGCTGGCTTCCATCAATACCCTTTGAGTTCTTATGTGAATTCCGTTATAAGAAGCCTGCTTAGGTGCTATTCAGAACACTATAGTCTTGTGGAGAAGGATGGGGCCATGTTGCTGGGATGGAAAAACAGAAATTTGATTTCAGCTTCAGCCTGGCATTGA 1221 0.4488 MDSKQFLNFDVTSSGGIPRTSSYPTVSPIPNRLLGSLKIDTGNSPISSLSTQFDSDTLSALSDSQETLSGASPSCDSLQESNHHFHRSFLPQNACWDQETRHRLLELETRLMEHDGDDEVTTSKTPFGESSRPTTSGQRNRPWSQEGQGSEYTQSESKGQGSEYTQSEVKRVEKRHKSMEVETSAQGFPTSNLKQLLIVSAKALSENKMKDFDHLIGKARSCVSISGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPEGKDLLSYMQLLYDMCPYLKFGYMAANGAIAEACRNEDQIHIIDFQICQGTQWTTLLQALGARPGGAPHVRITGIDDPVSRYARGDGLEVFTMAGFHQYPLSSYVNSVIRSLLRCYSEHYSLVEKDGAMLLGWKNRNLISASAWH* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4342 406 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 351 IPR005202 -
Lja3g4342 406 MobiDBLite consensus disorder prediction 167 181 - -
Lja3g4342 406 MobiDBLite consensus disorder prediction 113 186 - -
Lja3g4342 406 ProSiteProfiles GRAS family profile. 184 406 IPR005202 -
Lja3g4342 406 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 352 406 IPR005202 -
Lja3g4342 406 MobiDBLite consensus disorder prediction 123 166 - -
Lja3g4342 406 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 22 351 - -
Lja3g4342 406 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 352 406 - -
Lja3g4342 406 MobiDBLite consensus disorder prediction 60 79 - -
Lja3g4342 406 Pfam GRAS domain family 351 405 IPR005202 -
Lja3g4342 406 Pfam GRAS domain family 193 341 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4342 Lja-Chr3 83663100 83664865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4342 352 405 GRAS Transcription Factor Family AT5G48150 59.259 2.18e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g4342 GRAS 8.9e-44 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4342 - - gmx:100797644 470.314