Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4330 ATGGACATTATCATCACATTCATAATCACACTTACCTACATACTCCTCCTTCTCCCTTACAAACTTTCCATAGCAGCTGAGGACTCCATTCATTTATCACAACCCCTCACCCATGGCCAAACCTTGGTGTCCCAACATGGAACCTTTGAACTCGGTTTCTTCCGCCCGGACGGTAACTCTAACAGAACATACCTCGGTATATGGTTCAAGAACATCCCTGTTCGGAAAGTCGTTTGGGTTGCAAACAGAGCCAATCCAATCAACGGTTCGAACAATATCATGTTAACAGTGAACATCACAGGCAACCTCGTCCTCACACAAGATGGCACTGTCATTTGGTTCACAAACATTCAAAAACAAGCACTGAATAACAATTCAGTGGCTGTGCTATTGGATAGTGGCAATCTTGTGGTGGGGAATGACCGACAAGGGTACTTGTGGCAGAGCTTTGACTATCCGTCCGACACATTGCTGCCAGGGATGAAATTGGGAAGAAGCTTAAAATTGGGACATGATTGGAAAATAACATCATGGAAGAGTCCACAAGATCCATCCCCTAGTGAATTTTCATGGGGTTTACTACACCATGATAATTATCCTGAATATTACATCATGAAGGGAACAAATATAAAATTGTCCCGTTTTGGACCATTCAATGGCCAAAATCCTAGTGGAGTGCCAGAAATAAGATACCTTACAACTTCTACTGATCCTCTCCAAAATCGCTATGAGTTTGTCACCAACAAAGATGAGAGTTTCTACAGGTATAGCTACAACACAACCAACCCGGTCATCTCAATTATAGTGTTGAACCAAGCCACTGTGTTTCGCTATGTGTGGGTTGAACAAGATCAAATTTGGAGGACATATCGGTCATTTCCTAAAGACAAGTGTGACACTTATGGTCTTTGTGGAGCCTATGGGAATTGCATAATTAAAAGAGGACAAATGTGCCAATGTATCAAGGGGTTCAGTCCAAAGTCACCACAAGCATGGACATTAACCGATTGGAGTGGAGGGTGTGTCCGAGATAAACCATTAAGCTGCAACAATGGGACGCAAAAAGATGGGTTTATCAAATTTGGTGGCCTTAAAGTTCCGGATACAGCACATGCATCGTTGAATGAGACTATGGGTCTTGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTACACAAATTCAAACATAAATGGTGGAGGTAGTGGCTGTGTCATGTGGTTTGGCGATCTAATTGATATAAGACACTTTGATGATGGTGGTCAAGATCTTTATATTCGGATGCCTACTTCGATGTTAGGGACTGAACACAGGCGTGAACGAAGGATTATAATTTATATCACCATTGCTTCAATTTGTGGATTGCTTCTACCATGTCTTTATTTTGTTTGGAGAGTCCACAAGAAGATTGTTGAAAGATCTCAAAGGCATATGGCTGATATAGATCTCCCACTGTTTGATCTAACAACCATTGATGCAGCCACTGATGGCTTCTCGATGAATAAAAAGATTGGAGAAGGTGGTTTTGGACCAGTATATTGGGGAAAATTAACAAATGGTCAAGAAATAGCCGTGAAGAAACTTTCAAGTTTATCGAGTCAAGGAATGACTGAGTTCATAACTGAAGTGAAACTAATTGCACAACTTCAACACCGAAATCTTGTAAGACTTCTAGGTTGTTGCATTGAAGGACAAGAGCGAATTTTGATTTACGAATACATGGACAATGGTTGCCTACACTCATTCATTTTTGATAATATTAAAGGTAAATTGCTAAAGTGGCCTCAACGGCTCAACATAATTTGTGGAGTATGTAGAGGGCTTGTGTATCTTCACCAAGATTCCAGATTGCGGATTATCCACAGGGATCTCAAAGCTAGTAATATTTTACTTGATCAAGATTTAAATCCAAAAATATCAGATTTTGGAACAGCTAGAACTTTTGGAGGAGACCAGACAGAAGGAAACACGAAGAGAATAATTGGGACCTATGGGTACATGGCTCCGGAGTATGTTGCAAAAGGGATTTTTTCAGTAAAATCTGATGTTTTCAGTTTTGGTGTTCTATTGTTAGAGATCATATGTGGCATTAGAAATAAAGCATACTATCACACAGATGACAATCTTAACCTTGTTGGTCAAGCTTGGACATTGTGGAAAGAAGGTAGAGCATCAGAGTTAATTGACTCAAACATTGAAAACTCATATGTTGTTTCGGAAGTATTGCGTTGTATGCATGTTGGTCTCTTGTGCATACAACAAAACCCAAACGATAGGCCTACCATGACCTCTGTCATGCTAATGCTAGAGAGTGAGATGAGGCTGGAGGTGCCTAAAGAACCTGGTTTCTTTTATAGTAATATTTCACCTGATTCATGTTTAAGTAGGAGTCGGAGGGATAGAAGTTTAGCATATGATGTAACCTTTTCTTCATTTGGTCCTCGATGA 2460 0.4028 MDIIITFIITLTYILLLLPYKLSIAAEDSIHLSQPLTHGQTLVSQHGTFELGFFRPDGNSNRTYLGIWFKNIPVRKVVWVANRANPINGSNNIMLTVNITGNLVLTQDGTVIWFTNIQKQALNNNSVAVLLDSGNLVVGNDRQGYLWQSFDYPSDTLLPGMKLGRSLKLGHDWKITSWKSPQDPSPSEFSWGLLHHDNYPEYYIMKGTNIKLSRFGPFNGQNPSGVPEIRYLTTSTDPLQNRYEFVTNKDESFYRYSYNTTNPVISIIVLNQATVFRYVWVEQDQIWRTYRSFPKDKCDTYGLCGAYGNCIIKRGQMCQCIKGFSPKSPQAWTLTDWSGGCVRDKPLSCNNGTQKDGFIKFGGLKVPDTAHASLNETMGLEECRDKCLNNCSCMAYTNSNINGGGSGCVMWFGDLIDIRHFDDGGQDLYIRMPTSMLGTEHRRERRIIIYITIASICGLLLPCLYFVWRVHKKIVERSQRHMADIDLPLFDLTTIDAATDGFSMNKKIGEGGFGPVYWGKLTNGQEIAVKKLSSLSSQGMTEFITEVKLIAQLQHRNLVRLLGCCIEGQERILIYEYMDNGCLHSFIFDNIKGKLLKWPQRLNIICGVCRGLVYLHQDSRLRIIHRDLKASNILLDQDLNPKISDFGTARTFGGDQTEGNTKRIIGTYGYMAPEYVAKGIFSVKSDVFSFGVLLLEIICGIRNKAYYHTDDNLNLVGQAWTLWKEGRASELIDSNIENSYVVSEVLRCMHVGLLCIQQNPNDRPTMTSVMLMLESEMRLEVPKEPGFFYSNISPDSCLSRSRRDRSLAYDVTFSSFGPR* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4330 819 ProSiteProfiles PAN/Apple domain profile. 349 433 IPR003609 -
Lja3g4330 819 Pfam S-locus glycoprotein domain 214 328 IPR000858 GO:0048544
Lja3g4330 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 184 IPR036426 -
Lja3g4330 819 Gene3D Phosphorylase Kinase; domain 1 466 577 - -
Lja3g4330 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Lja3g4330 819 ProSiteProfiles Bulb-type lectin domain profile. 27 151 IPR001480 -
Lja3g4330 819 CDD B_lectin 33 153 IPR001480 -
Lja3g4330 819 Gene3D Transferase(Phosphotransferase) domain 1 578 783 - -
Lja3g4330 819 PANTHER - 26 812 - -
Lja3g4330 819 Pfam D-mannose binding lectin 77 179 IPR001480 -
Lja3g4330 819 Gene3D - 22 150 IPR036426 -
Lja3g4330 819 SUPERFAMILY Protein kinase-like (PK-like) 479 774 IPR011009 -
Lja3g4330 819 SMART serkin_6 502 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4330 819 CDD STKc_IRAK 508 774 - -
Lja3g4330 819 SMART blect_4 33 153 IPR001480 -
Lja3g4330 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Lja3g4330 819 ProSiteProfiles Protein kinase domain profile. 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4330 819 Pfam Protein tyrosine and serine/threonine kinase 503 770 IPR001245 GO:0004672|GO:0006468
Lja3g4330 819 Pfam PAN-like domain 352 418 IPR003609 -
Lja3g4330 819 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 812 - -
Lja3g4330 819 SMART ntp_6 353 432 IPR003609 -
Lja3g4330 819 CDD PAN_AP_plant 346 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4330 Lja-Chr3 83435774 83439612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4330 490 788 Receptor kinase-like Gene Family AT4G23150 58.333 4.05e-117 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4330 PK_Tyr_Ser-Thr 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4330 - - gmx:100802962 966.452