Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4320 ATGGCAGATGATCAGTTTCAAGCTAGTGGAAACTGGTGGGAATCAGCAAGAAACGTGAGATTTGAAAGTGGGGAATCACAGTCTTCATCTTCTGGTCTCACCAACTTTGGTGGCTGGCAACAACAACAGCATCATCATCATGATAACACCATTTCTGCCTCTGTCAGTAATTCCTCTGTGGTTTTCCATGATTCTCAGAAGCTTCAACCTCCAGATTCTGCAGCCACTTCTGCCACCAACGACCCCAACTTGCACATGATGATGGGTTTGGGCCTTTCACCTCGAGCCATGGATTGGAATCAAGCATCTTTGCTACGAGGCAGCGAGAAGGCTTCAGAGGGAAGTTTCAGGTCCATGCTGCAAGAGAATTCAAGCCCCAACTTTCAGCAAGAAACTGAGGGTGTTGGTGTTGGTGTTGGATTGTCTCAAGTTCATTGGAGACCAGAAAAATTGTTCACTGCAGACTCTTCTAGCAATGATTTCAAGCAAGTTGTGAACAGGGGTTTCTCTTTGGATCAGACACAGTTTAGTCCTCAATATAGCTCTGGAGACAGTAATGTGACAAGCCAAAGTTTGCCTTGTAACTTTCAGATTGATCATTCCTATGGGAACTCTTCAATATTACAAGGACTATTAGGACCTGATCAAAGCAATAATCATCAACAACCCCAGCAAGGTTCATTTGAGAATCGTCCCATGAATAATTTTCCATACTCACCAAGCTATGGCTTCAATAACTCCAATAATGAGTTAGTTCCTTCTTGGTCTAAAGTTCCTCAATTCTTAAGAGCTTCACCTCCCAAACAACCACAAGCGAATAACCAGTTGCATTTTACCAACAACGCTCCCTTTTGGAACGCTTCTGAGGCTCCTATTAAGGATGCTCGATCCAGCTTCTTCCCTTCTTTGCAATCCCCATTTCCTACACCAAGTTTTGATACACAATCAAAGAATATATCTGAAGTAAGGGACTCAAGTGCTGTGGTGAAGAAAAGTGGGAGTGAGCCAGCTCCAAAAAGGTCCAGGAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATTACTGCACTCCAACAATTAGTTTCACCTTTTGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAGTATATCAAGTTTCTCCATGAACAAGTGACTGTTTTAAGCACCCCATATATGAAAAGTGGAGCTCCAATACAGCATCAACAGAATTCTGGTAAATCCAAGGAAGCTGAGGGTCCAAAGCAGGATCTAAGAAGCCGAGGGCTATGTTTGGTGCCAGTGTCTAGTACATTCCCAGTGACTCATGAACCAACAGTTGAATATTGGACACCAACATTTGGAGGCACTTACAGATAA 1392 0.4353 MADDQFQASGNWWESARNVRFESGESQSSSSGLTNFGGWQQQQHHHHDNTISASVSNSSVVFHDSQKLQPPDSAATSATNDPNLHMMMGLGLSPRAMDWNQASLLRGSEKASEGSFRSMLQENSSPNFQQETEGVGVGVGLSQVHWRPEKLFTADSSSNDFKQVVNRGFSLDQTQFSPQYSSGDSNVTSQSLPCNFQIDHSYGNSSILQGLLGPDQSNNHQQPQQGSFENRPMNNFPYSPSYGFNNSNNELVPSWSKVPQFLRASPPKQPQANNQLHFTNNAPFWNASEAPIKDARSSFFPSLQSPFPTPSFDTQSKNISEVRDSSAVVKKSGSEPAPKRSRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQNSGKSKEAEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4320 463 MobiDBLite consensus disorder prediction 21 87 - -
Lja3g4320 463 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 452 - -
Lja3g4320 463 MobiDBLite consensus disorder prediction 407 429 - -
Lja3g4320 463 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 452 - -
Lja3g4320 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Lja3g4320 463 MobiDBLite consensus disorder prediction 306 327 - -
Lja3g4320 463 Gene3D - 353 415 IPR036638 GO:0046983
Lja3g4320 463 MobiDBLite consensus disorder prediction 21 83 - -
Lja3g4320 463 MobiDBLite consensus disorder prediction 306 351 - -
Lja3g4320 463 CDD bHLH_AtbHLH_like 349 400 IPR045239 -
Lja3g4320 463 MobiDBLite consensus disorder prediction 207 242 - -
Lja3g4320 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 410 IPR036638 GO:0046983
Lja3g4320 463 SMART finulus 354 398 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4320 Lja-Chr3 83250531 83254478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4320 106 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.595 1.01e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4320 - - gmx:100818424 636.336