Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4311 ATGGAAAGCTCCAAGGTACTACTTCTGGTATCCTTGTTGTTTTACTTCACGCCCCGGCTCAACGCGTTGGACACCATCTCTGCAGGACAATCTCTGAAAGGTAGTGAGACTCTAATCTCACAATCAGGAACTTTTGAAGCTGGATTCTTCAGCTTTGGAGATTCAAATAGCTTCTTGTACTTTGGTGTATGGTACAAGAATATTTCTCCTAGAACAGTTGTGTGGGTGGCCAATAGAGATACCCCACTAGGAAACTCCTCATGTGTTTTGCAGTTGAAAAATGGAAGAAAGCTTGTTATTCTTGACAGTATAGGAGCAACCATCTGGTCCTCCAATTTATCAGCAACTGCAAAGAAACCAGTTGTGCAGCTTTTGCAGTCAGGAAACCTTGTAGTGAAAGAAGCGAATAGTTCTGCGGCTGCGAATTTTCTGTGGCAAAGCTTTGATTATCCTGGTGACACTCTACTTCCAGGGATGAGGCTCAGAAGTAGCAAGGTAAGTGGCCAGAATACATCTTTGACATCTTGGAGAAACACACAAGATCCTGCCATAGGGCCATATTCATTCTTTATCGATACTCATGGCCTTCCTCAAGCAGTTATTACATATGGAAGGACCTTGTTGTTCAGAGCAGGATCATGGAATGGCTATTTTTTCGCGGGGATTCCGTCGCAAACGCTGAATAAGTACTTTAATTTCACAGGGATTGTGTTAACTGGGACGAATGTTTCTTATGGATATGAACTTTTGAGTAGTTCCATTATTTCAAGGTTCATCCTCACTTCAACAGGGATTGTGCAGAGTTTTTTGTGGTCAGATCAGACAGAGAGTTGGCAGCTTCTACTAGCTGGCCCTGTTGACCAGTGTGACAATTACGCAATTTGCGGCGCAAATGCTAATTGTGATGTTAACAACACTCCATTTTGTGACTGCCTGCATGGTTTCATTCCCAAGTCACTAGAAAAATGGAACTCTTTAAATTGGTCTGGTGGGTGTGTTAGGAGAACAAAATTGGAGTGTGATAGCAGAGATGGGTTTCTGAAGGTTCCAAGTGTGAAGCTTCCCAACACGTCTCACTCGTGGTTTAACGTGAAGATGAACCTGAAACAGTGTGAGAACATGTGTTTGAAAAACTGCTCTTGCACTGCATATGCAAATTTGGATATTAGAGATGGTGGAAGTGGTTGCTTGCTTTGGTTTAGTGACATTGTAGACATGAGAACTCTACCATCTGGAGCACAAGACCTTTATGTAAAAGTAGCAGCTTCAGAACTAGGCCATAAAGGGAACAAAAAGCTCCTGGCAGGAATTCTAGCAGGCTCTATTTCCCTAATCTTGGTTATAATATTAATTGGAGTGGTCATCCTGTGGTGGAGAATGAAACTTAAGAAGAAAGATAAGAACAAAACAAAAATATGGAGTCACACTGATGTGAGAGAAAATGAAGATATTGACATACCAATATTTGATTTTTCAACCATAGCCAAAGCTACTAACCACTTCTCTATCTCTAACAAATTGGGAGAAGGTGGATTTGGTCCAGTTTATAAGGGTACACTAACAAATGGGCAAGATATAGCTGTAAAGAGACTTAGCAACAATTCAGGTCAAGGATCGGAAGAGTTCCTAAACGAAGTTGCGCTCATAGCGAATCTCCAGCACCGAAATCTCGTGAAACTTATTGGGTGTTGCATTCAAGATGATGAGAGACTTTTGATTTATGAATTCATGATCAACAGAAGCTTGGACAACATCATTTTCGATCAAATAAAAAGCAGCTTACTGCATTGGACTCAACGCTTTCAAATTATTAGCGGGATTGCTCGAGGAGTCCTCTATCTTCATGAAGATTCAAGACTAAGGATTGTCCACAGAGATCTCAAGACCAGTAACATTCTTCTTGACGAACATATGAATCCAAAAATATCAGATTTTGGTCTTGCTAGGATATTTGGGGTAGATGAAGCTGAAGGAAAAACAAAAAGAGTAGTGGGAACCTTTGGTTATATATCTCCTGAATGCATCCGAGGATCTTTCTCTGTGAAATCAGATGTCTTTAGCTTTGGTGTCATTGTACTAGAGATAATTTGTGGAAAGAAGAACATGGAATTCTTTCACAATTATAATCTTGACCTTCTATGCTACGCATGGAGAGTGTGGAGTGAAGAGAAGCCTTTGGAATTGATAGATGAATCACTAGGTGATTCAATGGCACTATCTGAAGTGTTCAGATGCATTCACATTGGGCTCTTATGTGTACAAGAGAGACCAGAGGACAGGCCAGACATGTCAGGTGTAGTTTTAATGCTGAATGGTGAGAAATCATTGCCCATACCAAAGGAGCCTGCATTTTATCCACAACAATTTGGTTCTTCTTCAAACAATTATGAACTGGGCTCAACCAATGAAATTTCTCCTGTATCAATGGCCATTCTTCCTACTATGCTTGTTATTTCCATGCTTCTATTGTTCCTCTCTCCATTTTCCTCTGCAAAAGATACCATTACAAACCTTGAGTCACTTCCTGATGATGACACCACCTTGGTTTCTAAAGATGGAACCTTTGAGTTGGGTTTCTTCAACCCCGGTAGTTCCTCGAATCGCTATGTAGGAATCTGGTACAAAATCATCTCAGTTAGGACAGTTGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGGCAACTCCAGCCAGCTGATCATAAACCAAGATGGAAACCTTGTGCTTATCAACAAAAACAACTCAATTCTCTGTCCAGTTGCGCAGCTCTTAGACACTGGAAACTTAGTAATTAGAGAAGAGAACAACAACAATGAAGAATTTTTTTCGTGGCAGAGCTTTGATCATCCTTGTGATACAGTGTTACCAGGAATGAAGATTGGATGGGACAGAAAAACTGGTCTTAACAAGCGTCTCGTCGCCTGGAAAAACTGGGATGATCCATCTTCAGGAGACTTGAGTTCAGATATGGTGATCACAACCAATCCTGAAAGCTTAATTTGGAAAGGCTCAGTTAAGTACTACAGAACAGGACCATGGACTGGTCCTCGTTCAAGTAGTGTTGTTGGATTGATGGCTAATCCACTCTATGATTACAAATTTGTCAACAATGAAGAAGGGGTGTATTACATGTTCACTCTCAAGAATAGTTCTGTGATTTCCATACTTGTTTTGAATCAAACCCGTTCTCTTCGCCAACGCCTCATATGGATTCCTCAGTCCAAAACTTGGACTGTTTACCAATCCTTGCCACAAGATGATTGCGATTCTTATGACGTTTGTGGCGCGAATGGAAATTGCATCATTGATAGATCCCCAAGGTGTCAGTGTTTAGATGGATTCGAGCCGAAATTGCCGCAGCAATGGAATGCAATGGATTGGACAGAAGGGTGTGTGAGGAGTGAGAAGTGGAGGTGTGGGGTGAAAAACAGAGATGGGTTTAGTCTATTTAGTAGCATGAAGTTGCCTGATACTACAAATTCTTGGATTAATGAGAATATGACATTGAAGGATTGCGCCGCCAAATGCTTGGAAAATTGTTCTTGCACTGCTTATGCAAACTTGGATCCAAGTGGAGGGGGTAGTGGTTGTTCTATCTGGTTTGGTGATCTTGTTGATTTGAGGGTTTCACCAAGTGGACAAGATCTGTATGTTCGCACAGACACCTCAGATACAGATGCAAAAGATGGGGGTAGGAAAAAGGTAGTCTTGACAGTAACAATCACAGTTTCAGTTGTTCTGGTGATGATGTTATTGGGATTCTCCTACATTTGCATTACAAAGACCAAGAATAAAGAAGAAGTAAACAAAACCATGTTGGTGAAAGAGATAGATGAAGGTGGTGATGATGACTTGGAGCTTCCTTTCTTTGATGTCCCTACTATACTCAATGCAACCAATAACTTCTCAATCAACAATAAACTTGGTGAAGGTGGTTTTGGACCAGTTTACAAGGGTACATTACTAAACGGACAAGAGATTGCAATTAAAAGGCTTTCAAGAAGTTCAGGGCAAGGATTGATAGAATTTAAGAATGAAGTTATATTGTGTGCCAAACTTCAACATCGAAATCTTGTCAAAGTTATTGGTTGTTGCATTGAAGGAGAGGAAAAAATGCTGGTGTATGAATACATGTCCAACAAAAGCCTGGATTCATTTATTTTTGATTCGGTTCAAAGTAAATTGTTAGATTGGTGTATGCGCTTTAACATCTTGTATGGAATTGCTCGAGGGCTTCTTTATCTTCATGAAGATTCTAGATTAAGGATCATACATAGAGATCTTAAAGCAAGTAATATTTTATTAGACAATTATATGAATCCAAAAATTTCGGATTTTGGCATGGCTAGAATATGTGGAGGTGATCAAATTGAAGGCACAACAAATAGAATAGTTGGGACATACGGTTATATGGCACCTGAATATGCAATTGATGGATTATTCTCTATAAAGTCGGATGTATTTAGCTTTGGCGTATTATTGCTAGAAATTGTAAGTGGAAGGAAGAATAGAGCACTTACCTACCATGACCATGATCACAATCTTATTGAACATGCATGGAGATTGTGGAAAGAGGGCAATGCACACGAATTGATAGATGATTGCATGAGTGACTCATGTATTAAATCTGAAGTTTTACGCTGCATTCAAATTGCTCTTTTATGTCTACAACATCATCCTGATGATAGGCCAAACATGACTTCAGTGGTCGTGATGTTGAGCAGTGAAAATAGTTTACCTGAACCAAAGGAACCTGGTTTCTTAATTAAGAAGGTGTCGATTGAAGGAGAACATTCTTCTGGAAAACAGACATCTTCTTCAATGAATGAAATAACTATATCTATACATGCTAGATAG 4857 0.3994 MESSKVLLLVSLLFYFTPRLNALDTISAGQSLKGSETLISQSGTFEAGFFSFGDSNSFLYFGVWYKNISPRTVVWVANRDTPLGNSSCVLQLKNGRKLVILDSIGATIWSSNLSATAKKPVVQLLQSGNLVVKEANSSAAANFLWQSFDYPGDTLLPGMRLRSSKVSGQNTSLTSWRNTQDPAIGPYSFFIDTHGLPQAVITYGRTLLFRAGSWNGYFFAGIPSQTLNKYFNFTGIVLTGTNVSYGYELLSSSIISRFILTSTGIVQSFLWSDQTESWQLLLAGPVDQCDNYAICGANANCDVNNTPFCDCLHGFIPKSLEKWNSLNWSGGCVRRTKLECDSRDGFLKVPSVKLPNTSHSWFNVKMNLKQCENMCLKNCSCTAYANLDIRDGGSGCLLWFSDIVDMRTLPSGAQDLYVKVAASELGHKGNKKLLAGILAGSISLILVIILIGVVILWWRMKLKKKDKNKTKIWSHTDVRENEDIDIPIFDFSTIAKATNHFSISNKLGEGGFGPVYKGTLTNGQDIAVKRLSNNSGQGSEEFLNEVALIANLQHRNLVKLIGCCIQDDERLLIYEFMINRSLDNIIFDQIKSSLLHWTQRFQIISGIARGVLYLHEDSRLRIVHRDLKTSNILLDEHMNPKISDFGLARIFGVDEAEGKTKRVVGTFGYISPECIRGSFSVKSDVFSFGVIVLEIICGKKNMEFFHNYNLDLLCYAWRVWSEEKPLELIDESLGDSMALSEVFRCIHIGLLCVQERPEDRPDMSGVVLMLNGEKSLPIPKEPAFYPQQFGSSSNNYELGSTNEISPVSMAILPTMLVISMLLLFLSPFSSAKDTITNLESLPDDDTTLVSKDGTFELGFFNPGSSSNRYVGIWYKIISVRTVVWVANRDNPIKGNSSQLIINQDGNLVLINKNNSILCPVAQLLDTGNLVIREENNNNEEFFSWQSFDHPCDTVLPGMKIGWDRKTGLNKRLVAWKNWDDPSSGDLSSDMVITTNPESLIWKGSVKYYRTGPWTGPRSSSVVGLMANPLYDYKFVNNEEGVYYMFTLKNSSVISILVLNQTRSLRQRLIWIPQSKTWTVYQSLPQDDCDSYDVCGANGNCIIDRSPRCQCLDGFEPKLPQQWNAMDWTEGCVRSEKWRCGVKNRDGFSLFSSMKLPDTTNSWINENMTLKDCAAKCLENCSCTAYANLDPSGGGSGCSIWFGDLVDLRVSPSGQDLYVRTDTSDTDAKDGGRKKVVLTVTITVSVVLVMMLLGFSYICITKTKNKEEVNKTMLVKEIDEGGDDDLELPFFDVPTILNATNNFSINNKLGEGGFGPVYKGTLLNGQEIAIKRLSRSSGQGLIEFKNEVILCAKLQHRNLVKVIGCCIEGEEKMLVYEYMSNKSLDSFIFDSVQSKLLDWCMRFNILYGIARGLLYLHEDSRLRIIHRDLKASNILLDNYMNPKISDFGMARICGGDQIEGTTNRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGRKNRALTYHDHDHNLIEHAWRLWKEGNAHELIDDCMSDSCIKSEVLRCIQIALLCLQHHPDDRPNMTSVVVMLSSENSLPEPKEPGFLIKKVSIEGEHSSGKQTSSSMNEITISIHAR* 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4311 1618 Pfam Domain of unknown function (DUF3403) 1574 1615 IPR021820 GO:0004674
Lja3g4311 1618 ProSiteProfiles EGF-like domain profile. 1084 1120 IPR000742 -
Lja3g4311 1618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Lja3g4311 1618 PANTHER - 819 1615 - -
Lja3g4311 1618 Pfam PAN-like domain 340 406 IPR003609 -
Lja3g4311 1618 Pfam PAN-like domain 1139 1207 IPR003609 -
Lja3g4311 1618 ProSiteProfiles Protein kinase domain profile. 501 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4311 1618 CDD STKc_IRAK 507 772 - -
Lja3g4311 1618 CDD B_lectin 844 950 IPR001480 -
Lja3g4311 1618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1423 1435 IPR008271 GO:0004672|GO:0006468
Lja3g4311 1618 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544
Lja3g4311 1618 Pfam S-locus glycoprotein domain 1008 1117 IPR000858 GO:0048544
Lja3g4311 1618 ProSiteProfiles PAN/Apple domain profile. 1139 1221 IPR003609 -
Lja3g4311 1618 SUPERFAMILY alpha-D-mannose-specific plant lectins 882 981 IPR036426 -
Lja3g4311 1618 PANTHER - 12 797 - -
Lja3g4311 1618 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 819 1615 - -
Lja3g4311 1618 Gene3D - 827 947 IPR036426 -
Lja3g4311 1618 Gene3D - 20 148 IPR036426 -
Lja3g4311 1618 Gene3D Phosphorylase Kinase; domain 1 475 576 - -
Lja3g4311 1618 Gene3D Phosphorylase Kinase; domain 1 1279 1377 - -
Lja3g4311 1618 ProSiteProfiles Protein kinase domain profile. 1302 1587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4311 1618 CDD PAN_AP_plant 1142 1220 - -
Lja3g4311 1618 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 797 - -
Lja3g4311 1618 MobiDBLite consensus disorder prediction 1598 1618 - -
Lja3g4311 1618 Gene3D Hepatocyte Growth Factor 337 418 - -
Lja3g4311 1618 Gene3D Transferase(Phosphotransferase) domain 1 1378 1583 - -
Lja3g4311 1618 Gene3D Transferase(Phosphotransferase) domain 1 577 777 - -
Lja3g4311 1618 SMART ntp_6 341 420 IPR003609 -
Lja3g4311 1618 SMART ntp_6 1142 1220 IPR003609 -
Lja3g4311 1618 SMART blect_4 29 151 IPR001480 -
Lja3g4311 1618 SMART blect_4 839 950 IPR001480 -
Lja3g4311 1618 CDD B_lectin 30 151 IPR001480 -
Lja3g4311 1618 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Lja3g4311 1618 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Lja3g4311 1618 CDD PAN_AP_plant 336 421 - -
Lja3g4311 1618 Pfam D-mannose binding lectin 881 976 IPR001480 -
Lja3g4311 1618 Pfam D-mannose binding lectin 72 177 IPR001480 -
Lja3g4311 1618 ProSiteProfiles Bulb-type lectin domain profile. 832 944 IPR001480 -
Lja3g4311 1618 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Lja3g4311 1618 Pfam Protein tyrosine and serine/threonine kinase 1303 1571 IPR001245 GO:0004672|GO:0006468
Lja3g4311 1618 Pfam Protein tyrosine and serine/threonine kinase 503 767 IPR001245 GO:0004672|GO:0006468
Lja3g4311 1618 SMART egf_5 1087 1132 IPR000742 -
Lja3g4311 1618 SMART egf_5 288 333 IPR000742 -
Lja3g4311 1618 CDD STKc_IRAK 1308 1573 - -
Lja3g4311 1618 SUPERFAMILY Protein kinase-like (PK-like) 483 787 IPR011009 -
Lja3g4311 1618 SMART serkin_6 501 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4311 1618 SMART serkin_6 1302 1573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4311 1618 SUPERFAMILY Protein kinase-like (PK-like) 1285 1581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4311 Lja-Chr3 83090708 83113619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4311 445 787 Receptor kinase-like Gene Family AT4G23230 52.586 1.49e-111 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4311 PK_Tyr_Ser-Thr 8.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4311 - - tcc:18593897 1684.46