Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4305 ATGGATAGAATTCAGGAGGCAGGTGAAAGGAATAACTCTCAGCGTCCCCCGACTTCGGCAGTTGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTCGTGCGGTGGGCACTTAATAAGTTTGTTCCTGAAGGAATGATTATCTTCAAGCTCATACATGTCCATGCTGGTATAAAAGGCGTTCCAACACCAATGGGAAATGTGATTCCCCTTTCACAAGTGCGCAGTGACATAGCAACTGCTTACAAACAGGAAGTGGAGATGCAAACAAATCAAATGCTTCTACCCTTTAAGAGAATGTGTGAGCAGAGAAAGGTGCATGTAAATGTTGCAGTGATTGAATCCGATGATGTGGCAACTGCGGTTGCAGAGGAAGTAGCTAAGGATGCTATAACCAAACTTGTCGTTGGAGCTTCGTGTCGAGGCTTATTTAAAAGTAAACAGAAGGGTATGTCTGCAAAAATCTCAGTCTGCACTCCAAGATTTTGTACAGTTTTTGCTGTTTCAAAAGGAAAATTGTCCATTCGGCAATCAGACATGCAGTATGAAGGAAGCATTAAAGATGACATTAGTGATACCAGTTTTTCCTCCGGCAGCTCATCAAATTATACTTCCACCACTCAGACAGACTCTGGATCAATTGGATCATATCCTGGTTTACGTTCCTCGCTGCCAACACAGAGATTTCAAGCTCTTTCAAGTATAAATCAGAGCCTTCTAAGTACAACAACTAGTATAAATGAAACTAATCATTCTAGAGGCCAATCTCTTGATTTTGGAAGAGAAAATGCTGCTCCAAGTTCTGCTAGAAACTCAGATACTGATCGTGCTCTGAGTCGGGTCTCTAGTTGCAGAAGCTTTATTTCAGATACTGAATCTTGGATTTATGAACAAAGTTCTTGCAAGGATGTGTCACTAGCAGATAAATTTCCATCACCAAATAGGCAGGCAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGAATGCATGCTGTAGCTCAAAGTGAGAACATTGATGCATCAAGAAAGCTTAATGAACTCAGCAAAAGAAGATCCGAAGAATCCATGAAAATGAAAGAGATTATTTCTAAGGAGGAGGTGGCCGAGGAGTTAGCAAGATACGAAATAGACAAATATGATGCTGCAGTAAGAGAATCTGCTTATTTGAAAGAATGTGCTGAAAGAGAAGCTGCAGAAAGAAAAGAAACGGAGTTGAAAGCTATACGTGCTGCCAAAGAGAAAGATAAGCTGGAGGGTGCTCTAAGTGGTTCTGTTCTCCAGTACCGAAAGTTTACCTGGGACGAAATAGTTTCAGCTACTTCATCTTTTTCTGAAGATCTGAAAATTGGAATGGGAGCATATGGAGTGGTGTATAAGTGTACTTTGTATCATACAACTGTTGCTGTTAAAGTTCTCCACCCTAATGGAAACCGCCAAAGTAAGCAATTCCAGCAGGAGCTGGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTATGAATATATGGAGAATGGTAGCTTGGAGGACAGACTACTCCAAAAGAACAGTACTATCCCAATCCCATGGTTTGAGAGGTTTCGAATAGCTTGGGAAGTTGCATCAGCTCTTGCCTTTCTTCACAGCACAGAACCAGAACCTATCATCCATCGTGACATGAAACCGGCAAACATCTTGCTCGGTCGGAACCTTGTCAGTAAGATTGGTGACATAGGCCTTTCTACAGTCCTCAGTTCAGATAGTTTATCTACCATGTATAAGGACTCAGAGCCTGTTGGGACACTCTGCTACATCGATCCTGAGTATCAAAGGACTGGATTAATATCCCCAAAGTCTGATGTTTATGCTTTTGGAATAGTGATCTTACAGTTATTGACAGCAAAATCAGCAATGGCAGTTACTCATGTGGTTGAAACAGCTATTAATGATGGGAAATTAACAAATGTGTTGGATCCAAAGGCAGGGTCATGGCCATTTCAAGAGACACTAGAATTAGCTCGGTTAGGACTGAGCTGTGCAGAGCTTCGGCGTAGAGACCGGCCCGATTTAAAAGATCAGGTGCTTCCAACCCTGGAGAGATTGAAAGAAGTTGCTGCTAGAGCTCAACATTCTTCTTCAATTGTTACTATTAAATCCAGACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGCGTTGCAGCGGATGGATATACGTATGATCGCAAAGCAATTGAAAAGTGGCTTCAAGAGAATGATAATTCACCAATGACAAATATGGCTTTGCCTCATAAGAATCTAATTCCTAATTACGCACTTGTGTCAGCAATTTTGGAGTGGAAGTCCAGTGAAATATGA 2418 0.4144 MDRIQEAGERNNSQRPPTSAVALAIKGNKKSKYVVRWALNKFVPEGMIIFKLIHVHAGIKGVPTPMGNVIPLSQVRSDIATAYKQEVEMQTNQMLLPFKRMCEQRKVHVNVAVIESDDVATAVAEEVAKDAITKLVVGASCRGLFKSKQKGMSAKISVCTPRFCTVFAVSKGKLSIRQSDMQYEGSIKDDISDTSFSSGSSSNYTSTTQTDSGSIGSYPGLRSSLPTQRFQALSSINQSLLSTTTSINETNHSRGQSLDFGRENAAPSSARNSDTDRALSRVSSCRSFISDTESWIYEQSSCKDVSLADKFPSPNRQANFNLELEKLRIELRHAQGMHAVAQSENIDASRKLNELSKRRSEESMKMKEIISKEEVAEELARYEIDKYDAAVRESAYLKECAEREAAERKETELKAIRAAKEKDKLEGALSGSVLQYRKFTWDEIVSATSSFSEDLKIGMGAYGVVYKCTLYHTTVAVKVLHPNGNRQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLLQKNSTIPIPWFERFRIAWEVASALAFLHSTEPEPIIHRDMKPANILLGRNLVSKIGDIGLSTVLSSDSLSTMYKDSEPVGTLCYIDPEYQRTGLISPKSDVYAFGIVILQLLTAKSAMAVTHVVETAINDGKLTNVLDPKAGSWPFQETLELARLGLSCAELRRRDRPDLKDQVLPTLERLKEVAARAQHSSSIVTIKSRPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLQENDNSPMTNMALPHKNLIPNYALVSAILEWKSSEI* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4305 805 Coils Coil 406 428 - -
Lja3g4305 805 CDD STK_N 21 172 - -
Lja3g4305 805 Gene3D Phosphorylase Kinase; domain 1 430 523 - -
Lja3g4305 805 ProSiteProfiles Protein kinase domain profile. 451 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4305 805 Gene3D HUPs 16 151 IPR014729 -
Lja3g4305 805 SUPERFAMILY Protein kinase-like (PK-like) 433 706 IPR011009 -
Lja3g4305 805 PANTHER OS02G0152300 PROTEIN 17 801 - -
Lja3g4305 805 Pfam U-box domain 736 802 IPR003613 GO:0004842|GO:0016567
Lja3g4305 805 SMART serkin_6 451 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4305 805 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 17 801 - -
Lja3g4305 805 ProSiteProfiles U-box domain profile. 734 805 IPR003613 GO:0004842|GO:0016567
Lja3g4305 805 ProSitePatterns Protein kinases ATP-binding region signature. 457 478 IPR017441 GO:0005524
Lja3g4305 805 Pfam Protein tyrosine and serine/threonine kinase 456 706 IPR001245 GO:0004672|GO:0006468
Lja3g4305 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 734 805 IPR013083 -
Lja3g4305 805 Coils Coil 324 344 - -
Lja3g4305 805 CDD RING-Ubox_WDSUB1_like 739 779 - -
Lja3g4305 805 Gene3D Transferase(Phosphotransferase) domain 1 524 733 - -
Lja3g4305 805 SMART Ubox_2 738 800 IPR003613 GO:0004842|GO:0016567
Lja3g4305 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672|GO:0006468
Lja3g4305 805 SUPERFAMILY RING/U-box 730 802 - -
Lja3g4305 805 MobiDBLite consensus disorder prediction 192 218 - -
Lja3g4305 805 MobiDBLite consensus disorder prediction 244 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4305 Lja-Chr3 83035166 83042816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4305 21 803 U-box Gene Family AT4G25160 53.178 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja3g4305 PK_Tyr_Ser-Thr 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4305 - - gsj:114409387 1236.86