Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4295 ATGGCTTTGAGGATTATAGCGGTTTCAGCGGTTTCAACAGTGTTAAGTTTTGTGGGTCTGCAGTTTTGCACAGACTTGTCATTAGATAAACTTAGATCAGATGGACTAATTGGCTGGAATTTAACTCAATTTGACAACGCCAGCCATGACGTTGAGCTTGACGTTGAGGTACCTTTGGGTCTTTATACCACCATAGGGCTGCTGGCTAATTGCCTGATCAATATATTTGTCCTTCTCAATCTTTGTCTCAAGGCCGTGTTCTTCACAGAGTTGTATCCCTCTGAAACTCGTAAACTGATTGAACGTCTCATTAATTATGTCATTTACAAGGGGACGTTTCTACCACTGATTGTGCCACCAACAATTTATCAGGCAGGTCTTTGGTCAACTTGGCTGATTGTGCTTTGTTCTTTTAAGATGTTTCAAGCTCTAGCTAGAGATCGCTTAGATCGGCTAAATGCATCTCCATCTGCTACACCCTGGACATATCTTCGTGTATATTCAGCACTGCTATTCATTTTCTTGGTTGATGTTCTCTGGATAAGGCTTTGTCTGGCGACATATACAACACATGCGTCCTCTATGTTTCTGTTACTATTCTTTGAGCCTTTGAGTATTGCTTTTGAGACCCTACAGGCCATTTTGATACATGGATTTCAGTTGCTTGACATATGGCTTCATCATTCAGCTTGCCACAGCAGTGATTGCCGAATGCCTAAATTGCTTGATACATTAACCACAGGTTCGTTATTGGAATGGAAGGGAATTCTTATCCGGAACTTGGGTTTTTTCCTTGACATGGCAACTTTTCTTATGGCGCTTGGTCATTACTTGTATATATGGCGGCTGCATGGCATGGCTTTCCATCTCGTAGATGCAGTGCTATTTCTGAATATACGTGCATTGCTTAGTGCGATAATAAACCGCGTAAAAGGCTTTATCAAGCTAAGGATAGCTCTGGGAACACTTCATGCAGCTCTTCCCGATGCAACAACTGAAGAGCTAAGAACATATGATGATGAATGTGCTATATGTAGAGAGTCCATGGCTAAGGCTAAAAAGCTAAACTGTAATCACCTCTTCCATCTTTCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACCGAGATATACACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGCCGGCCTGAAAATGAAACAAACTCTAGTGCGGGAGTAATATCTAGTGATGAGCAACTTGCACGCCAAATGAGTGCAGGATTTGATCGGCCAAACCCTGCCAGACATACCGTGCCTGCAGGATTCTATCAAAATCAGACACTGAACAACGCCGAAGGTGTTCCTCTAAGGGGTCCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTATTGATGGAGCTGGTCCATCTACTGCTATCAGAACAGTTGGACTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACTTATGCTCAGACTGCCTTTGAAGATACTGCTTGGAACCTCTGGCCTATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAACCATTCCTTCCACTGGTGGAAGATTGCCAGGAGGAACTGGTAGTTTACATATAAGGACGCCTTCACGTTCGGCAAGTGATAATACAGCAAATTTACTTGCTATGGCCGACACTGTTCGGGAGGTCCTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAACAAACAAATTCTGTCACCGTTACTGTGAATAATCTTCTCCAAATGTGA 1773 0.4337 MALRIIAVSAVSTVLSFVGLQFCTDLSLDKLRSDGLIGWNLTQFDNASHDVELDVEVPLGLYTTIGLLANCLINIFVLLNLCLKAVFFTELYPSETRKLIERLINYVIYKGTFLPLIVPPTIYQAGLWSTWLIVLCSFKMFQALARDRLDRLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLATYTTHASSMFLLLFFEPLSIAFETLQAILIHGFQLLDIWLHHSACHSSDCRMPKLLDTLTTGSLLEWKGILIRNLGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRVKGFIKLRIALGTLHAALPDATTEELRTYDDECAICRESMAKAKKLNCNHLFHLSCLRSWLDQGLTEIYTCPTCRKPLFAGRPENETNSSAGVISSDEQLARQMSAGFDRPNPARHTVPAGFYQNQTLNNAEGVPLRGPGLDSGWLHSWPNQGIDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDTAWNLWPINPSQASASGSTIPSTGGRLPGGTGSLHIRTPSRSASDNTANLLAMADTVREVLPHIPDDIIFQDLQQTNSVTVTVNNLLQM* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4295 590 SMART ring_2 342 383 IPR001841 -
Lja3g4295 590 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 590 - -
Lja3g4295 590 Gene3D - 549 589 - -
Lja3g4295 590 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 590 - -
Lja3g4295 590 Pfam CUE domain 554 590 IPR003892 GO:0043130
Lja3g4295 590 Pfam Ring finger domain 340 384 IPR001841 -
Lja3g4295 590 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Lja3g4295 590 SUPERFAMILY RING/U-box 329 390 - -
Lja3g4295 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 392 IPR013083 -
Lja3g4295 590 ProSiteProfiles CUE domain profile. 550 590 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4295 Lja-Chr3 82936307 82945652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4295 61 401 C3H Transcription Factor Family AT3G16090 27.793 3.24e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4295 K10636 - gmx:100820578 1038.87