Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4279 ATGGAATCACTACCACCACCACCAGACACCATTCCTCACAATGTTACTCCTCTGACAGTTGAACCAATGAAAAATCTAACAACACGTTTGCCTCTGGCAAGGAGAGGCCTAGGAACCAAGGGGCAGAAAGTGACCCTTTTAGCTAACCATTTTAAGGTTGGAGTGAGCAAGACTGAAGGCCACTTCTACCATTACAGTGTTGCTATGTCTTATGAGGATGGTCACCCTGTTGAAGTTAAAGGTATTGGGAGAAAGGTGATAGATAAGCTCTCTGAAACTTATGGGGTTTTACAGAGTTTTGCATATGATGGTGAGAAAAGCTTGTTCACTGTTGGTTCTTTACCACACAACAAGCAGGAATTTGTTGTTGTGTTGGAGGAATTTTCAGCTAAGAGGGTTGGAAGGAATGGAAGCCCTAATAGCTTTGATGATGGAGACAGCAAGAGAATGAAGCGTCAAACTCGGTCCAAAACTATTAAGGTGGACATAAATTATGCAGCAAAAATCCCAATTCAAGCAATAGCAAATGCATTGCGTGGTCAGGATTCTGAGCACTTTCAAGAAGCAGTGAGGGTTTTGGACATTATACTGAGGCAGCATGCTGCAAGACAGGGATGTCTCCTTGTTAGACAGTCCTTCTTTCATGACAGCCCCCGGAATTTTACTGACATTGGAGGTGGTGTTCAAGGTTGCCGTGGCTTCCATTCCAGCTTCCGAGCCACACAAGGGGGTTTATCTCTGAATGTTGATGTTTCAACTACCATGGTTGTAAAGCCTGGCCCTGTTATTGACTTCCTCTGCCTGAATCAAAATGTTCAAAACCCAAACTTGATTGATTGGTTAAAGGCTAAAAGGATGCTCAAGAACCTGAGAGTGAAGGCAAATAATATGGAGTATAAAATCATTGGACTGAGTGAAAAGCCCTGCAGGACACAAACATTTTCATTAAGACATGGAAAGGATGCGAATGGTGAAGTGCAGTCAAGTGAAATCACAGTTTATGACTACTTTAAACACAACAAAAAGATTGAACTGCGGTATTCTGCTGATATGCCATGCATCAATGTTGGGAAACCCAAGCGTCCATCTTACTTTCCTGTAGAGCTATGCTCGTTGGTCTCATTGCAGCGGTACACCAAGGCACTGACAAATTTACAAAGGGCTCAGCTAGTGGAGAAGTCAAGGCAAAAGCCCCAAGAAAGGAAAGCGTCTTTGCAAGATTCTTTAAGAACCAGCAAATATGTTAATGAGCCTATGCTTCACTCTTCTGGCATTACCATTGAACCTAACTTTATTCAAGTTGAAGCCCGTGTTCTGCAAGCTCCAAGGCTTACAGTTGGAGGTGGACTGATCTTTTGTCCCAGGAATGGGCGCTGGAATTTCAATGACAAGAAACTAGTTAGACCTGTGACGCTCGAGCGTTGGGCCATTGTAAACTTCTCAGCTCGCTGTGACACACAACACCTGTGCAATGTCATCAAGACTTGTGCTCAAAGGAAAGGGATGAACTTGCGTCCACCCTTCAGGGTATTTGAAGAGGATAGATGTAATACGCGTGAGCCACCAGTTGTCAGGGTTGAGAGATTGTATGAACATGTAAAGGCCAACCTGCCTGGGCCCCCTCAGCTTCTGTTATGTATTCTTCCAGAGAGGAAGAATTCTGAGCTTTATGGTCCTTGGAAAAAGAAAAACCTTGCTAATGAAGGGGTTGCAACCCAGTGTATTGCACCTACAAGAATTAATGATCAGTACATTACAAATGTACTCTTGAAGATTAATGCAAAGCTTGGTGGGATGAACTCCTTCCTAACAGTTGAGGACGCACGTTCAATACCCTTAGTCTCTCAGAAACCTACCTTGATTCTTGGGATGGACGTTTCACATGGGTCTCCTGGTCGTTCTGATGTGCCATCTATTGCAGCCGTTGTGAGCTCCAGATGCTGGCCTGAAATTTCTCGATATAGAGCTTCTGTTCGTACTCAGTCATCTAAAGTTGAGATGATTTCATCTTTGTTCAAGCCTGTTTCTGATACTGAGGATGATGGTATCATGAGGGAGCTGATTATGGACTTCCACAGTTCTTCAGGAATGAAGCCTCAACAAATTATAATTTTTAGGGATGGAGTGAGTGAATCGCAGTTCAACCAGGTCCTGAACAATGAACTGGGTGAAATTATTAAGGCATGTAATCATCTGGACGAGAAATGGGATCCCAAATTCACTCTGATTATTGCACAGAAGAATCATCACACTAGGTTCTTCCATGCTAACAACGCTCCAGACAATGTTCAACCTGGAACTGTCATTGACAACAATATATGTCATCCAAAGAACAATGACTTTTATATGTGTGCTCATGCTGGGGCGATTGGGACAAGTCGGCCAACTCATTATCATGTATTACATGATGAAATTGGATTTACAGCAGATGATTTGCAAGAACTTGTACACTCACTATCTTATGTGTATCAAAGGAGCACAACTGCCATATCTGTTGTTGCCCCCATATGCTATGCACACCTGGCAGCGGCTCAGATGGGACAATTCATGAAGTTTGATGAGTTCTCTGAGACTTCTTCCAGCCATGGAAGTCTTACATCTGCTGGTCCAATTCCTGTCCCCCAACTACCCAGGCTTCACAAAGCTGTGGCCAATTCTATGTTCTTCTGTTAG 2673 0.4343 MESLPPPPDTIPHNVTPLTVEPMKNLTTRLPLARRGLGTKGQKVTLLANHFKVGVSKTEGHFYHYSVAMSYEDGHPVEVKGIGRKVIDKLSETYGVLQSFAYDGEKSLFTVGSLPHNKQEFVVVLEEFSAKRVGRNGSPNSFDDGDSKRMKRQTRSKTIKVDINYAAKIPIQAIANALRGQDSEHFQEAVRVLDIILRQHAARQGCLLVRQSFFHDSPRNFTDIGGGVQGCRGFHSSFRATQGGLSLNVDVSTTMVVKPGPVIDFLCLNQNVQNPNLIDWLKAKRMLKNLRVKANNMEYKIIGLSEKPCRTQTFSLRHGKDANGEVQSSEITVYDYFKHNKKIELRYSADMPCINVGKPKRPSYFPVELCSLVSLQRYTKALTNLQRAQLVEKSRQKPQERKASLQDSLRTSKYVNEPMLHSSGITIEPNFIQVEARVLQAPRLTVGGGLIFCPRNGRWNFNDKKLVRPVTLERWAIVNFSARCDTQHLCNVIKTCAQRKGMNLRPPFRVFEEDRCNTREPPVVRVERLYEHVKANLPGPPQLLLCILPERKNSELYGPWKKKNLANEGVATQCIAPTRINDQYITNVLLKINAKLGGMNSFLTVEDARSIPLVSQKPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPEISRYRASVRTQSSKVEMISSLFKPVSDTEDDGIMRELIMDFHSSSGMKPQQIIIFRDGVSESQFNQVLNNELGEIIKACNHLDEKWDPKFTLIIAQKNHHTRFFHANNAPDNVQPGTVIDNNICHPKNNDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFDEFSETSSSHGSLTSAGPIPVPQLPRLHKAVANSMFFC* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4279 890 Pfam Argonaute linker 1 domain 209 257 IPR014811 -
Lja3g4279 890 Gene3D - 438 604 - -
Lja3g4279 890 ProSiteProfiles PAZ domain profile. 299 374 IPR003100 GO:0005515
Lja3g4279 890 SMART Piwi_a_2 543 851 IPR003165 GO:0003676
Lja3g4279 890 Gene3D - 610 890 IPR036397 GO:0003676
Lja3g4279 890 Pfam PAZ domain 263 390 IPR003100 GO:0005515
Lja3g4279 890 SMART DUF1785_2 207 259 IPR014811 -
Lja3g4279 890 Pfam Piwi domain 544 851 IPR003165 GO:0003676
Lja3g4279 890 SUPERFAMILY Ribonuclease H-like 527 849 IPR012337 -
Lja3g4279 890 CDD PAZ_argonaute_like 259 373 - -
Lja3g4279 890 Pfam Argonaute linker 2 domain 400 445 IPR032472 -
Lja3g4279 890 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 889 - -
Lja3g4279 890 SUPERFAMILY PAZ domain 254 413 IPR036085 GO:0005515
Lja3g4279 890 CDD Piwi_ago-like 418 845 IPR045246 -
Lja3g4279 890 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 889 - -
Lja3g4279 890 Gene3D paz domain 253 378 - -
Lja3g4279 890 Pfam N-terminal domain of argonaute 42 197 IPR032474 -
Lja3g4279 890 ProSiteProfiles Piwi domain profile. 543 851 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4279 Lja-Chr3 82783561 82789348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4279 6 890 Eukaryotic Initiation Factors Gene Family AT1G48410 34.454 1.13e-160 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4279 K11593 - csin:114304184 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4279 3 82783561 82789348 Lja3g4279 3 82783561 82789348 ECH