Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4278 ATGGTGTCTCAAAGTGGTGCTGACAATAATGGAAAACATTCACAACTCCAGCCTTTGGTGAGGCAAAACTCGATGTACAGTCTTACGCTTGATGAAGTTCAGAATCAATTAGGCGAGCCGTTAAGTTGTATGAACCTTGATGAGCTTCTTAAAAATGTATCAAATGCCGAGGCAAATCAATCCATCGGCATGGACAATGAGGACACGGCTCAAGCCGGTCAAGCTGACGCGCGGCCGCGTCACGCTAGTCTGCCGTTAACTGGTGCACTGAGCAAGAAGACAGTTGATGAGGTTTGGAGGGATATCCAACAGAGCAAAGATAATAACGAGAAGAAGTCTCAAGAGAGACAGCCGACTTTGGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCCGGGGTAGTTTCTGAAGCATCTTCTAATAGAAAGAATACCGGTCCTTTGGTCGGTATTGATTCAAATGTTGCTGCATCTCAGTTTCCTCCACCTGGTCCATGGATACAGTATCCGCAACCGCAATATCTGCATCCACAACAAAATTTAATTGGGATTTATATGCCTGGCCAGAGTATACCACAGCCATTACACATGGGGGCAGGTGCTCAGATGGATGTTCCATTTGTGGATGGTCAGGTGGCATTGCCTTCACCTGGGACAGGAGCCTTGTCAGATACAAAGAAACCGGGGAGAAAACGGAGCACGCCGGAAGACATGGTGGAGAAGACTGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGAGCAAGAAAACAAGCTTACACAACTGAATTGGAGAACAAAGTCTCGCGTCTGGAAGAGGAAAATGAAAAGCTGAGGAAACAGAAGGAGCTAGAGACCATGTTCTCCAGTGCTCCACCTCCTGAACCTCGATATCAGATTCGACGAACTTCATCAGCTTTATTCTGA 948 0.4694 MVSQSGADNNGKHSQLQPLVRQNSMYSLTLDEVQNQLGEPLSCMNLDELLKNVSNAEANQSIGMDNEDTAQAGQADARPRHASLPLTGALSKKTVDEVWRDIQQSKDNNEKKSQERQPTLGEMTLEDFLVKAGVVSEASSNRKNTGPLVGIDSNVAASQFPPPGPWIQYPQPQYLHPQQNLIGIYMPGQSIPQPLHMGAGAQMDVPFVDGQVALPSPGTGALSDTKKPGRKRSTPEDMVEKTVERRQKRMIKNRESAARSRARKQAYTTELENKVSRLEEENEKLRKQKELETMFSSAPPPEPRYQIRRTSSALF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4278 315 SMART brlzneu 241 297 IPR004827 GO:0003700|GO:0006355
Lja3g4278 315 Gene3D - 243 297 - -
Lja3g4278 315 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 248 263 IPR004827 GO:0003700|GO:0006355
Lja3g4278 315 SUPERFAMILY Leucine zipper domain 245 290 IPR046347 GO:0003700|GO:0006355
Lja3g4278 315 CDD bZIP_plant_BZIP46 245 294 - -
Lja3g4278 315 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 243 288 IPR004827 GO:0003700|GO:0006355
Lja3g4278 315 MobiDBLite consensus disorder prediction 215 315 - -
Lja3g4278 315 Pfam bZIP transcription factor 245 288 IPR004827 GO:0003700|GO:0006355
Lja3g4278 315 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 313 IPR043452 GO:0003700|GO:0045893
Lja3g4278 315 PANTHER BZIP TRANSCRIPTION FACTOR 4 313 - -
Lja3g4278 315 MobiDBLite consensus disorder prediction 225 291 - -
Lja3g4278 315 Coils Coil 261 291 - -
Lja3g4278 315 MobiDBLite consensus disorder prediction 68 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4278 Lja-Chr3 82760472 82765715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4278 1 315 bZIP Transcription Factor Family AT3G56850 52.923 2.00e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g4278 bZIP_1 5.6e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4278 K14432 - gmx:100784924 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4278 3 82760472 82765715 Lja3g4278 3 82760472 82765715 ECH