Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4276 ATGTCACCCCCAACACTTTCCTTTTCTCTCTTCTTCCTCTTCCTCTTCCTATTTGCACCATCACTCCTAGCTCAATCTCCATCTTCTAATTCTTCTTCTCCTTCTTCTGCCTCTGCCTGCAAATCCACATTGTATCCAAAACTATGCCGATCAATCCTCTCAGCAATCCGTTCCTCACCCTCTGATCCATACAATTTCGGCAAATTCTCCATCAAACAAAGCCTCAAACAAGCCAGAAAACTATCCAAAGTCTTCGATGACTTCCTCAAACGCCACCAATCTTCTTCTTCTTCATCTCTCAACCGCGCAGAGATCGCTGCACTTGGCGACTGCAGTGACCTGAACCATCTCAACGTGGACTACTTGAGCTCCGTCTCCGAGGAGCTCAAATCATCAACAGCTAATGCAACAGACTTAGAGCTTGTTGAGAAGATTGAGAGCTATTTAAGCGCGGTGTCGACGAACCAGTACACTTGCTATGATGGTTTGGTGGTGACCAAGAGCGGCATTGCCAATGCTCTTGCTGTTCCATTGAAGGATGTGACGCAGTTGTATAGTATTTCACTTGGGTTGGTCACTCAGGCACTTGATAAAAATCTGAAGAGGAGCAAGACCAGGAAACATGGGCTTCCTACTAAGGTGTTTAAGGTCAGGCAGCCACTTGAGAAGCTTATCAAGCTTCTTCGCACAAAGTACAGTTGCAAGAAATCATTCAATTGCACTAGAACTGAAAGGATTCTGAAAGAAAGTGAAAACCAAGGAGTTCTATTAAACGACTTTGTGATTGTGAGTCCCTATAATGGGACAGACAACTACACTTCTATTGGAGATGCTATTGCTGCTGCACCAAATCACACTAAGCCACAAGATGGATATTTCCTTATCTATGTCAGAGAAGGATACTATGAGGAATATGTAATTGTTCCCAAAGAAAAGAAGAATATTCTGCTAGTTGGAGATGGTATTAACAAGACTATAATCACAGGGAACCATAGTGTCATAGATGGATGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCTGGAGAAAGATTTACAGCAGTGGATGTAACATTCAGAAACACAGCAGGTCCTGCAAAACACCAAGCAGTAGCAGTGAGGAACAACGCCGACCTGTCCACTTTCTACCGTTGCAGCTTCGAAGGGTATCAAGACACACTCTATGTCCACTCTCTGAGGCAATTCTACAGAGAATGTGATATCTATGGCACTGTGGACTTCATTTTTGGCAATGCTGCAGTGGTCTTCCAGAACTGCAACATCTACGCCAGAAAACCGCTGCCATTCCAGAAGAATGCTGTCACAGCACAAGGCAGAACCGATCCGAATCAGAACACTGGAATTTCAATCCAAAACTGCACAATTGATGCTGCACCAGACTTGGCTGCAGAGTTGAATTCCACCTTGAGTTACTTAGGAAGGCCATGGAAGGTTTATTCAAGGACTGTTTATCTTCAGTCATATATTGGAGATCTAATTCATCCTTCTGGGTGGTTAGAGTGGAATGGCACAGTTGGGTTGGACACCCTCTTTTATGGAGAGTTCAACAACTATGGACCTGGTTCAAAGACTAGCAATAGGGTACAATGGCCAGGTTACTCTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTGCTTAATTTTACTTTGGGAAATACATGGCTTCCTGATACAGATATACCCTATGCTGAAGGATTACAAAATTAG 1731 0.4356 MSPPTLSFSLFFLFLFLFAPSLLAQSPSSNSSSPSSASACKSTLYPKLCRSILSAIRSSPSDPYNFGKFSIKQSLKQARKLSKVFDDFLKRHQSSSSSSLNRAEIAALGDCSDLNHLNVDYLSSVSEELKSSTANATDLELVEKIESYLSAVSTNQYTCYDGLVVTKSGIANALAVPLKDVTQLYSISLGLVTQALDKNLKRSKTRKHGLPTKVFKVRQPLEKLIKLLRTKYSCKKSFNCTRTERILKESENQGVLLNDFVIVSPYNGTDNYTSIGDAIAAAPNHTKPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFTAVDVTFRNTAGPAKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPLPFQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLGRPWKVYSRTVYLQSYIGDLIHPSGWLEWNGTVGLDTLFYGEFNNYGPGSKTSNRVQWPGYSLLNATQAWNFTVLNFTLGNTWLPDTDIPYAEGLQN* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4276 576 Gene3D - 261 576 IPR012334 -
Lja3g4276 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 194 IPR006501 GO:0004857
Lja3g4276 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 195 IPR035513 -
Lja3g4276 576 SMART PMEI_2 31 191 IPR006501 GO:0004857
Lja3g4276 576 CDD PMEI-like_3 40 193 - -
Lja3g4276 576 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Lja3g4276 576 PANTHER PECTINESTERASE 10 574 - -
Lja3g4276 576 SUPERFAMILY Pectin lyase-like 260 573 IPR011050 -
Lja3g4276 576 Pfam Plant invertase/pectin methylesterase inhibitor 37 190 IPR006501 GO:0004857
Lja3g4276 576 PANTHER PECTINESTERASE 10 574 - -
Lja3g4276 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 194 IPR035513 -
Lja3g4276 576 Pfam Pectinesterase 265 559 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4276 Lja-Chr3 82737297 82741810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4276 39 574 Carbohydrate Esterase AT3G10720 64.259 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4276 K01051 - gmx:100816503 958.362