Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4275 ATGTCTTCTCCCTATGGCAAAGTTGATGAACACGAGCAAATATTGTTAGAAGCCAAGAGGAAAACCAGGAAGAGAATCACAATCATAAGCTTGTCCTCAATAGTCTTGGTTGGTGTTGTGTTTGCTTCTGTTTTTGGAACACTTAACAACAACTCCAAAAGTGGCAATAATGCTAATTCTTCTGAATCAGTAACGAGTTCGGTGAAGGCGGTGTGTGATGTGACGCTGTACAAGGACTCGTGCTATAGAAGCCTTGGCTCTGCTGTGGATTCAGGGGATGTTCAGCCTGAGGAGCTGTTCAAGGTGTCCATTGAAGTGGCCTTAGCTGAAGTGTCTAGAGCTGTTGGGCATTTCAATGAAGATGGGGGTGTTTTCAAAGGGTTGAATGATGCAAAGATCAAAGAAGCTGTGAGGATTTGCAGGGATGTTTTGGATCTTGCTGTTGATCATTTGAATAGCTCTTTGAGTACTTCAGGGGAAAGTTCTTCCCTTCTTAAGGTTTTTGAGGATCTTCAAACATGGTTAAGTGCTGCAGGTACATACCAGCAGACATGCATTGAAGGCTTTGAAGATGCAAAAGAACCATTGAAGGAAAAGGCAGAAACCTATCTCAAAAACGCTACAGAACTCACCAGCAACAGTCTTGCCATCATTACCTGGATCAACAAGGCCGCAAGCACCGTGAACTTGAGGCGCTTACTGAGTTCACTACCTCATCAGAACGAAGCACCGAAATGGCTTCATTCAAATGACAGGAAGCTGCTTCAAACACAGGATTTGAGATCAAAAGCTCATATTGTTGTGGCCAAAGATGGAAGTGGGAAATACAAAACTATTTCTGCTGCACTTAAGCATGTCCCTGATAAGAGCACCAAGAGGACTGTGATCTATGTGAAGAAAGGGCTTTACTATGAAAATGTCAGGGTGGAGAAGACCAAATGGAATGTGATGATCATTGGAGATGGCATGACTGCTACAATTGTGTCTGGAAGGCTTAACGTTGTTGATGGCACACCAACATTTTCAAGTGCAACATTTGCTGTGTTTGGAAGGAATTTCATAGCTAGAGACATGGGTTTTCGCAATACAGCTGGTCCTCAAAAGCACCAAGCAGTAGCACTGATGACAAGTGCTGATCAAGCAGTTTTCTACAAGTGTCACATTGATGCATATCAGGACACACTCTATGTTCATGCCAATCGTCAATTCTATAGAGAATGCTACATTTATGGCACAGTGGACTTCATTTTTGGAAATTCAGCAGCAGTGATCCAAAACTGCAACATTTTGCCAAAGGTACCAATGCATGGGCAGCAGATCACAATCACAGCACAAGGCAAAACTGACCCTAACATGAACACAGGAATCTCAATTCAGTATTGCAATATTGCACCCTTTGGGAACTTGAGTTCTGTCCAAACTTACCTAGGAAGACCCTGGAAGAATTACTCAACCACAGTTTACGTAAGGTCCAGAATGGACAGCTTTGTTAACCCAAAGGGATGGTTACCATGGGTAGGGAACTCAGCACCAGACACCATCTTTTATTCAGAATTTCGGAATGTTGGACCAGGTGCTTCAACAAAGAATAGAGTGAAGTGGAAGGGTTTGAGAACCATTACTAGTAAACAAGCCAGCAAGTTTTCAATCAAGTCTTTTCTTCAAGGAGATAGATGGATTCCTTCATCAGGTGCCCCTTTTAAGTCTGATCTGTGA 1716 0.4283 MSSPYGKVDEHEQILLEAKRKTRKRITIISLSSIVLVGVVFASVFGTLNNNSKSGNNANSSESVTSSVKAVCDVTLYKDSCYRSLGSAVDSGDVQPEELFKVSIEVALAEVSRAVGHFNEDGGVFKGLNDAKIKEAVRICRDVLDLAVDHLNSSLSTSGESSSLLKVFEDLQTWLSAAGTYQQTCIEGFEDAKEPLKEKAETYLKNATELTSNSLAIITWINKAASTVNLRRLLSSLPHQNEAPKWLHSNDRKLLQTQDLRSKAHIVVAKDGSGKYKTISAALKHVPDKSTKRTVIYVKKGLYYENVRVEKTKWNVMIIGDGMTATIVSGRLNVVDGTPTFSSATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVFYKCHIDAYQDTLYVHANRQFYRECYIYGTVDFIFGNSAAVIQNCNILPKVPMHGQQITITAQGKTDPNMNTGISIQYCNIAPFGNLSSVQTYLGRPWKNYSTTVYVRSRMDSFVNPKGWLPWVGNSAPDTIFYSEFRNVGPGASTKNRVKWKGLRTITSKQASKFSIKSFLQGDRWIPSSGAPFKSDL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4275 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 222 IPR035513 -
Lja3g4275 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 221 IPR006501 GO:0004857
Lja3g4275 571 SUPERFAMILY Pectin lyase-like 262 568 IPR011050 -
Lja3g4275 571 Gene3D - 260 571 IPR012334 -
Lja3g4275 571 CDD PMEI-like_3 70 223 - -
Lja3g4275 571 SMART PMEI_2 63 217 IPR006501 GO:0004857
Lja3g4275 571 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Lja3g4275 571 PANTHER PECTINESTERASE 4 569 - -
Lja3g4275 571 Pfam Pectinesterase 265 557 IPR000070 GO:0030599|GO:0042545
Lja3g4275 571 Pfam Plant invertase/pectin methylesterase inhibitor 67 217 IPR006501 GO:0004857
Lja3g4275 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 221 IPR035513 -
Lja3g4275 571 PANTHER PECTINESTERASE 4 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4275 Lja-Chr3 82733530 82736724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4275 1 571 Carbohydrate Esterase AT3G10710 57.391 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4275 - - gmx:100811152 905.205